BS22081.complete Sequence
1613 bp assembled on 2011-01-31
GenBank Submission: KX800924
> BS22081.complete
GAAGTTATCAGTCGACATGACTGTGACCTATACCTCACGTGTGAGTACCT
CGAGTGTTCTCAGTAATTTCTTGGGGCTGCTGGTCAGATGGCGCGGCAGT
ATTTACAAGTTAATATGGTTGGACCTTATTGTATTTTTCGGATTGTACTG
TTTACTGGCAATTACATATCGTCTGTTGGTAAACGAAGAGGGCAAAAGGT
TTTTTGAGGCCATTATGTCGTATTGCGAGAAAAATGGCTCCCTCATTCCG
TTATCGTTCGTTTTGGGATTTTTCGTGAGAATCGTGATGAACCGATGGTG
GGACCAATATACCACCATTCCTTGGCCAGATGGAATTGCCATTTTGATAA
GCACCAGTATCCATGGCTCCGATGATAGAGCCAGGGTAATGAGGCGAACT
ATCCTAAGATATGTGTGCCTGTGCCAGGTGATAGTATTCACCATGATATC
ACCGCGTGTCAAGCGCCGATTCCCCACCTACACTCAAATTATTGAGGCTG
GCTTTCTGCTGGAAAATGAAAAGAAAATCATTGAGGCCATGGATCAGGCC
TTCCCAAGTTATCCAAAGCACTGGATGCCCATCGTTTGGGCAGCTAGTAT
TGTGATGAGAGCGCGGAGGGAGAATAAAATCCGGGATGACTACGCTGTTA
AGACCATCATCGATGAATTGAACCAGTTACGCGGGAATTGTGGATTTTTG
CTCTATTACGATTGGATAAGTGTTCCACTGGTCTACACCCAAGTGGTCAC
CGTGGCCACGTACTCCTTCTTCCTGTTCAGTGTCCTCGGACAGCAGTGGA
ATGAAAGTCATTCCGACGAGGATGGTACTAGGATCAGGAGATGGTTTCCG
ATCCTGACCGTTCTCCAGTTTTTCTTTTACATGGGTTGGCTCAAGGTAGC
CGAGACGCTGATAAATCCTTTCGGAGAGGATGATGACGACTTCGAGCTCA
ACTGGATAATCGATAGGAATCTTACCGTTTCTTATTGCATTGTGGATGAG
ATGCACCAGGAGCATCCGGAACTTGTTAAGGATCAGTATTGGGAAGAGGT
CTTCCCTAATGAAATTCCATACGCTCAGCCAAAAATGCGTCAAAATCCTC
CAGCAGCTTCCACGGCCTATATGGAATCACAATCAAAACTCCAGAAACGC
CATGAATCTGCAATGTCAACTCTTAGTACCCGTTCGCGAAACAACTTCCG
ACAAAACTTCCTGGGAAGACCATCTGCCACTGGTAGCTACTCAGACTCCA
TCCAAATGGAAGATGGGCCGTCGCGAGTGACCTTCAGTGAGAATCAATTT
GATTTGCCACATGATGAAGCGAACAGCTCACACAAGCCGTCGCAATCCAC
AATTGACTTTAACGATCTAATTGAGCAGCGTCGTCGCGAACGCAGGGAAC
GCATTCGACACCGATTTTTGGATATGCAAAGTACCCATCTGCGACATGAT
ACCTCCGGTGCTCCTTATACGATCACAGTTCTTCGTCCCCCATCCGATGA
AACTCTGTCCGAGAGTCAGGAAGCGGGGGACAGAGCTCAACAGGATCCAT
CGGGCAGCAAGGAACCCCCTCCAAATAAGACGGAAAAGCAGGATTAGAAG
CTTTCTAGACCAT
BS22081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best4-RB | 1581 | CG7259-PB | 1..1581 | 17..1597 | 7905 | 100 | Plus |
| Best1-RD | 2211 | CG6264-PD | 859..1049 | 866..1056 | 385 | 80.1 | Plus |
| Best1-RC | 2355 | CG6264-PC | 859..1049 | 866..1056 | 385 | 80.1 | Plus |
| Best1-RD | 2211 | CG6264-PD | 499..740 | 515..756 | 235 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best4-RB | 1662 | CG7259-RB | 27..1613 | 12..1598 | 7920 | 99.9 | Plus |
| Best1-RD | 2930 | CG6264-RD | 1297..1487 | 866..1056 | 385 | 80.1 | Plus |
| Best1-RC | 3074 | CG6264-RC | 1297..1487 | 866..1056 | 385 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15299283..15300032 | 197..946 | 3750 | 100 | Plus |
| 3L | 28110227 | 3L | 15300648..15300893 | 1353..1598 | 1230 | 100 | Plus |
| 3L | 28110227 | 3L | 15300374..15300587 | 1139..1352 | 1070 | 100 | Plus |
| 3L | 28110227 | 3L | 15300124..15300317 | 945..1138 | 970 | 100 | Plus |
| 3L | 28110227 | 3L | 15299124..15299238 | 86..200 | 575 | 100 | Plus |
| 3L | 28110227 | 3L | 15298984..15299059 | 12..87 | 365 | 98.7 | Plus |
| 3R | 32079331 | 3R | 10165019..10165099 | 946..866 | 225 | 85.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:46:52 has no hits.
BS22081.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:31:55 Download gff for
BS22081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best4-RB | 32..1612 | 17..1597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:46 Download gff for
BS22081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best4-RB | 32..1612 | 17..1597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:21 Download gff for
BS22081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Best4-RB | 32..1612 | 17..1597 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:21 Download gff for
BS22081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15298989..15299059 | 17..87 | 100 | -> | Plus |
| 3L | 15299126..15299236 | 88..198 | 100 | -> | Plus |
| 3L | 15299285..15300032 | 199..946 | 100 | -> | Plus |
| 3L | 15300126..15300317 | 947..1138 | 100 | -> | Plus |
| 3L | 15300374..15300587 | 1139..1352 | 100 | -> | Plus |
| 3L | 15300648..15300892 | 1353..1597 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:46 Download gff for
BS22081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15292089..15292159 | 17..87 | 100 | -> | Plus |
| arm_3L | 15292226..15292336 | 88..198 | 100 | -> | Plus |
| arm_3L | 15292385..15293132 | 199..946 | 100 | -> | Plus |
| arm_3L | 15293226..15293417 | 947..1138 | 100 | -> | Plus |
| arm_3L | 15293474..15293687 | 1139..1352 | 100 | -> | Plus |
| arm_3L | 15293748..15293992 | 1353..1597 | 100 | | Plus |
BS22081.pep Sequence
Translation from 16 to 1596
> BS22081.pep
MTVTYTSRVSTSSVLSNFLGLLVRWRGSIYKLIWLDLIVFFGLYCLLAIT
YRLLVNEEGKRFFEAIMSYCEKNGSLIPLSFVLGFFVRIVMNRWWDQYTT
IPWPDGIAILISTSIHGSDDRARVMRRTILRYVCLCQVIVFTMISPRVKR
RFPTYTQIIEAGFLLENEKKIIEAMDQAFPSYPKHWMPIVWAASIVMRAR
RENKIRDDYAVKTIIDELNQLRGNCGFLLYYDWISVPLVYTQVVTVATYS
FFLFSVLGQQWNESHSDEDGTRIRRWFPILTVLQFFFYMGWLKVAETLIN
PFGEDDDDFELNWIIDRNLTVSYCIVDEMHQEHPELVKDQYWEEVFPNEI
PYAQPKMRQNPPAASTAYMESQSKLQKRHESAMSTLSTRSRNNFRQNFLG
RPSATGSYSDSIQMEDGPSRVTFSENQFDLPHDEANSSHKPSQSTIDFND
LIEQRRRERRERIRHRFLDMQSTHLRHDTSGAPYTITVLRPPSDETLSES
QEAGDRAQQDPSGSKEPPPNKTEKQD*
BS22081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Best4-PB | 526 | CG7259-PB | 1..526 | 1..526 | 2786 | 100 | Plus |
| Best1-PA | 721 | CG6264-PA | 1..422 | 1..424 | 1277 | 55.9 | Plus |
| Best1-PD | 736 | CG6264-PD | 1..422 | 1..424 | 1277 | 55.9 | Plus |
| Best1-PB | 769 | CG6264-PB | 1..404 | 1..404 | 1277 | 58.2 | Plus |
| Best1-PC | 784 | CG6264-PC | 1..404 | 1..404 | 1277 | 58.2 | Plus |
