BS22110.complete Sequence
2537 bp assembled on 2011-02-18
GenBank Submission: KX805194
> BS22110.complete
GAAGTTATCAGTCGACATGGTAATGCATGCTAGAAAACCGCAGCGTATGA
ACGATGGGTACTTTGAGAAGCATACCAGTCACACATCATACCAGAGCTCA
AAGTACAGCAGTTCAAAGCGCGACTACGAACGCGATCGTTCCTCCAATTA
TCGCGATCGTGACCTGTCGCCAGGCGCTGGCGGTGGAGGAGGCGGCGGAT
CCGCTGGAGGAGGTGGCGGCGGTAGCGGAAATGGCGGCGGACCATTGAAC
AATGGCAACAGCTACCGCTCCCAGTCGCCGGACATTGATTCGCCGTCGTC
CCGTTCGCACGATCTGCGCGACCGCAGCGATCATCGGGGCGGAGGTGGCG
GCAATGGGCGTGGCGGCAGTGGCGAGCGGTACAGCTTTATGCAGAAGATG
CGAGATCGAGATCGGGATGTCTACAAGAAGGATAAATATTCAGATAAACG
TGATCGGCGTGGCAACGATCGCGATTCGGAGTCGTCGTATCGCACCAACC
ATGATAGGGATCGTCGTGGCGGAGGAGGCAGCGGAGGCGGCAGCGGCAAG
CTCTGCTCCTCGCGGGAGAACGACAAACGATCCGGGTCCGACGATCGCGA
TCGAGATCGGGATCGAGATCTGCGCGACTTGCGCGACAAGCGGGACCGCG
GTTCCGATCGCGACAGGGACATGTACAAGAAGGACAAGTACGCAGACAAA
CGAGAGCGCAGCGATCGCGGCGAACGGACGGCGCGTTATGGCGACTGGAG
CGAGCATGTCAGCTCATCAGGCAAAATGTATTATTACAACTGCAAGACGG
AAATCTCTCAGTGGGAGAAGCCAAAGGAATGGGTGGACAGAGAAAGAAAT
TTGCCGCGCGATCAGCATCGTGAGAAGGATTATCGTGACAAGGATCGCGA
TCGCGACCGCGATGATCGTTTCTCCAGATCAACATACAAACATTCCAATT
CTTCGCGGGACAATTCACGACTGAGATGGAATTACGACAACGATGGCGGT
CCGCCCAGTCATCGAAGGCGTTTGGATGGTCGACACAACGACAATGCTGA
CATGGATATAAGCGGCGACTCGACGCCTACCTCGGAAGCCAGTTACTCGC
TAAGCGGCACGCCCACCACACACGGCGGCGGTCCGGGCGGAGGCGGTCCC
GGAGGCGGCGGCGGTAGCAACAGCGATCAGCCAATGGGCAATGCCCTGCC
TCGTTTGTCCTCCCACCCAACTGCCAACTCCTCCGCATCCGTGGCGACGG
GCACAGGTGCGACGGGGGGACTGCACTACGGCAGCGGAACGGGCGGTGGC
CCGGTGACGGGCGCCACAATGCTGCCCACCATGTCGGGAATGCTGAACAG
CAACAGCAGCAACAGTGCCGGCGGCAGCAGCAGCAATGCCAGCAGCAGCA
GTCTGAGGAACTCCGTTGTCGGTCACATTGGCTCCACATCTGGCACGACT
GTGCCCACACTGGGAAGTCAGGATCCGCACCAGCATCATCTGAACTCGAA
TGCTCCACTGCCACCGGGTGCCAAGGGCAAGGATCAGGCGCTGCTGATGC
GCCAGAAGATGCACCTGGGCCTGGGCGTCCTCGATGTACAATCACATCAC
GGCGTTAACTCGGTTGGTTCGGTGTCAGATGGGACCAATCACGCCTACAA
TTCGGTCAATAACTCGGTCTCCGGCAGCTTACGGGACAACAGCGTAAACT
CGCCGTTGTATATGCACCACAGCATGTCGCCCTCGTTGAACTTCACCAAG
AGTCCCATACCGACGATTGTGGGCCACACGAACAACATGAGCATCGCCTA
CACCTGCAATCCACCCTTTGGCCTCAAGGCTACCCTCGATGGCGGAGTGA
TGGTGGCGAATGCCTCACCGGCCACGCCCGGTGGCAACGCCTCCTCCGGC
TCCAGTGGAGCGAATAGCAGCCAAAGCATCGTGCCCGGCATGGGCCCCGT
CTGCGGAATCAGTGTGATCACCTCGATGGGCAGCAACAGCGGCACGCTAT
GCGAAGGACCGCCTACGCCCACCCAGGAGCTGGATTTGAGCGGCTCGGCG
TTGGAGCAGCAACAGTTGGCCGCCGCAGCGGCAGCCGCGACAGCGTCAAG
CCTCCAGCTACAGGCGGCGCAACAGGCCCAGCAGCAGCGGAAATTGGATG
GGACGTCGTCGGCCACGCTGAGCTCACTGCAGAGCTGCGTGAGTTCCTCA
GGACAGGCGGCAAACCTACGTGGTCCCGAGATTTCGCCAAAGCTGGCCAA
ATACTTCCGCGCCGATCTGATCGCGCATGTGACCAATTGGCACGCGGAGG
TGCTGGAGCGTCAGGCGCAGAAGTGCTGTGAGGATACGCACCTGTTTGGC
GACATAACGTGCACGAGGATATGCGCGGAATTGAAGTGCGCCCGCAGCCT
GGTGCGAAGCACCGAAATCAATGCCACCCTGCAGGAACAAAAAATTATGT
ATTTACGCCACCAGATCCGCCGTATCGAGGAGTCGAAGACTCAGAACGCG
TTCATGTCAGACGATACTTAGAAGCTTTCTAGACCAT
BS22110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8949-RG | 2583 | CG8949-PG | 1..2505 | 17..2521 | 12525 | 100 | Plus |
| CG8949-RD | 2505 | CG8949-PD | 1..2505 | 17..2521 | 12525 | 100 | Plus |
| CG8949-RA | 2505 | CG8949-PA | 1..2505 | 17..2521 | 12525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8949-RG | 4532 | CG8949-RG | 693..3197 | 17..2521 | 12525 | 100 | Plus |
| CG8949-RD | 4773 | CG8949-RD | 633..3137 | 17..2521 | 12525 | 100 | Plus |
| CG8949-RA | 4532 | CG8949-RA | 693..3197 | 17..2521 | 12525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17070987..17071448 | 2144..1683 | 2310 | 100 | Minus |
| X | 23542271 | X | 17071818..17072234 | 1444..1028 | 2085 | 100 | Minus |
| X | 23542271 | X | 17073263..17073614 | 443..92 | 1760 | 100 | Minus |
| X | 23542271 | X | 17072946..17073199 | 695..442 | 1270 | 100 | Minus |
| X | 23542271 | X | 17071509..17071748 | 1684..1445 | 1200 | 100 | Minus |
| X | 23542271 | X | 17070745..17070915 | 2315..2145 | 855 | 100 | Minus |
| X | 23542271 | X | 17070501..17070630 | 2442..2313 | 650 | 100 | Minus |
| X | 23542271 | X | 17072291..17072388 | 1030..933 | 490 | 100 | Minus |
| X | 23542271 | X | 17072454..17072541 | 932..845 | 440 | 100 | Minus |
| X | 23542271 | X | 17072649..17072728 | 846..767 | 400 | 100 | Minus |
| X | 23542271 | X | 17070353..17070431 | 2521..2443 | 395 | 100 | Minus |
| X | 23542271 | X | 17072789..17072866 | 771..694 | 390 | 100 | Minus |
| X | 23542271 | X | 17076922..17076965 | 60..17 | 220 | 100 | Minus |
| X | 23542271 | X | 17075953..17075990 | 94..57 | 190 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 617..759 | 1992..1852 | 115 | 57.2 | Minus |
BS22110.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:42 Download gff for
BS22110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8949-RD | 693..3197 | 17..2521 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:20 Download gff for
BS22110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8949-RA | 693..3197 | 17..2521 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:01 Download gff for
BS22110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8949-RA | 693..3197 | 17..2521 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:01 Download gff for
BS22110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17070353..17070431 | 2443..2521 | 100 | <- | Minus |
| X | 17070501..17070628 | 2315..2442 | 100 | <- | Minus |
| X | 17070746..17070915 | 2145..2314 | 100 | <- | Minus |
| X | 17070987..17071447 | 1684..2144 | 100 | <- | Minus |
| X | 17071510..17071748 | 1445..1683 | 100 | <- | Minus |
| X | 17071818..17072233 | 1029..1444 | 100 | <- | Minus |
| X | 17072293..17072388 | 933..1028 | 100 | <- | Minus |
| X | 17072454..17072539 | 847..932 | 100 | <- | Minus |
| X | 17072649..17072724 | 771..846 | 100 | <- | Minus |
| X | 17072790..17072864 | 696..770 | 100 | <- | Minus |
| X | 17072946..17073197 | 444..695 | 100 | <- | Minus |
| X | 17073263..17073611 | 95..443 | 100 | <- | Minus |
| X | 17075953..17075989 | 58..94 | 100 | <- | Minus |
| X | 17076925..17076965 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:20 Download gff for
BS22110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16964386..16964464 | 2443..2521 | 100 | <- | Minus |
| arm_X | 16964534..16964661 | 2315..2442 | 100 | <- | Minus |
| arm_X | 16964779..16964948 | 2145..2314 | 100 | <- | Minus |
| arm_X | 16965020..16965480 | 1684..2144 | 100 | <- | Minus |
| arm_X | 16965543..16965781 | 1445..1683 | 100 | <- | Minus |
| arm_X | 16965851..16966266 | 1029..1444 | 100 | <- | Minus |
| arm_X | 16966326..16966421 | 933..1028 | 100 | <- | Minus |
| arm_X | 16966487..16966572 | 847..932 | 100 | <- | Minus |
| arm_X | 16966682..16966757 | 771..846 | 100 | <- | Minus |
| arm_X | 16966823..16966897 | 696..770 | 100 | <- | Minus |
| arm_X | 16966979..16967230 | 444..695 | 100 | <- | Minus |
| arm_X | 16967296..16967644 | 95..443 | 100 | <- | Minus |
| arm_X | 16969986..16970022 | 58..94 | 100 | <- | Minus |
| arm_X | 16970958..16970998 | 17..57 | 100 | | Minus |
BS22110.pep Sequence
Translation from 16 to 2520
> BS22110.pep
MVMHARKPQRMNDGYFEKHTSHTSYQSSKYSSSKRDYERDRSSNYRDRDL
SPGAGGGGGGGSAGGGGGGSGNGGGPLNNGNSYRSQSPDIDSPSSRSHDL
RDRSDHRGGGGGNGRGGSGERYSFMQKMRDRDRDVYKKDKYSDKRDRRGN
DRDSESSYRTNHDRDRRGGGGSGGGSGKLCSSRENDKRSGSDDRDRDRDR
DLRDLRDKRDRGSDRDRDMYKKDKYADKRERSDRGERTARYGDWSEHVSS
SGKMYYYNCKTEISQWEKPKEWVDRERNLPRDQHREKDYRDKDRDRDRDD
RFSRSTYKHSNSSRDNSRLRWNYDNDGGPPSHRRRLDGRHNDNADMDISG
DSTPTSEASYSLSGTPTTHGGGPGGGGPGGGGGSNSDQPMGNALPRLSSH
PTANSSASVATGTGATGGLHYGSGTGGGPVTGATMLPTMSGMLNSNSSNS
AGGSSSNASSSSLRNSVVGHIGSTSGTTVPTLGSQDPHQHHLNSNAPLPP
GAKGKDQALLMRQKMHLGLGVLDVQSHHGVNSVGSVSDGTNHAYNSVNNS
VSGSLRDNSVNSPLYMHHSMSPSLNFTKSPIPTIVGHTNNMSIAYTCNPP
FGLKATLDGGVMVANASPATPGGNASSGSSGANSSQSIVPGMGPVCGISV
ITSMGSNSGTLCEGPPTPTQELDLSGSALEQQQLAAAAAAATASSLQLQA
AQQAQQQRKLDGTSSATLSSLQSCVSSSGQAANLRGPEISPKLAKYFRAD
LIAHVTNWHAEVLERQAQKCCEDTHLFGDITCTRICAELKCARSLVRSTE
INATLQEQKIMYLRHQIRRIEESKTQNAFMSDDT*
BS22110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8949-PG | 860 | CG8949-PG | 1..834 | 1..834 | 4423 | 100 | Plus |
| CG8949-PD | 834 | CG8949-PD | 1..834 | 1..834 | 4423 | 100 | Plus |
| CG8949-PA | 834 | CG8949-PA | 1..834 | 1..834 | 4423 | 100 | Plus |
| CG8949-PE | 838 | CG8949-PE | 1..838 | 1..834 | 4408 | 99.5 | Plus |
| CG8949-PC | 832 | CG8949-PC | 1..832 | 1..834 | 4401 | 99.8 | Plus |
