BS22111.complete Sequence
1892 bp assembled on 2011-02-18
GenBank Submission: KX802688
> BS22111.complete
GAAGTTATCAGTCGACATGCATTATTACCTGGCTGCTATCTGCCTGGTGG
GCTTAATGGGCTCAGCCCTCGGTCAGTACAACCTGGTGCAGAAGGACAAC
TGCATCATTCCAAAGATCCTGCAGGGATCGTGGTTCTCGTGGGAAACGGG
CCTGCCCACGCTGACGGTGATCGACGCCACCTCGATGTCCAGCCGAGGCT
ACTGCATCAACTACATGCGCCACAAGGGCGACGAGTACTCATTTGTCTTC
AAGGAGCGATCCAAGGACTGCTATCACTGTGTCAGGACCATCATCCGCAC
CCTTAATGTGTTCGAAAAGTTTGAGGGGCCCTGCGTGGGCATACCCGCTG
GACAGGAACCCACCGTGGACTATGTGTGTCGTGGTGTTAAGGATGACCAG
CAGTTGATAACGCTCTTTAACGAGAACTTTGTGCCCATCAACTGCCGATC
GTCGCTGGAGGGAGTGTGGCATTTTACGTACCAGAACCGATTCCGATTCA
CGGGCGTATGCGATAAGCCCGACGCTCGCATTCAGTCCTGTCAAACGGCA
GGAACGCAGTTCCTCATCCAGAACCAGAAGTTCAACGTCACCTATCAGCA
GTGCGAGGGTATGGAGGGCACATTCACCGGCACCGTGGAGTTCAGCTGCC
TGGGCGATTGGTTTGTGGGCAAGAACCACTACTTTGCCGTGGCCAACACA
AAGGAGTCGCGTAAGGATGAGAAGTACCGCTGCTTCCTTAAGAATCGTGA
CGATGATCTTTACGTGGGCGTTTCCATTACGGCCGAATGTAACACACTGA
AGACGCCAGAAACGTCACCGGAGCGTCTAAAGCTGACGCCAGTGAAGGCT
GAGTTTGTGGAACCCGGTTGCACGCTACCACAAAACTTTAGCGGAGAATG
GGTGAACACTGCCAACATTGATGCCGATGTCTCGATCAGTGAGACCCACA
TAAACGAGACGTACTATCCGGATAAAGCTCGATACCGAAAGACAATCTAT
GTTTGCCGAGAGCGACGGGGTAATCGTGTGATGATGGCTCGCCTCACTGT
CGACGGTTGCCAGAAGGATTACGTGTGCTTTGACTTTATGCCCCGCCACC
ACAACATCATTCGCTACCGCAAGGGTTTGGCTGTGATCAAGGACGATTTT
AGTACAGTCTGCTCTTGGGTTCAGTTCCCCAATTCGGAGGCATGGAAATA
TGATCTGTTTCTTGCTCGAAATCCTGTGCCTGTTCGTTGCCCCGTTGCGG
GAAAATTCAACTTTACGCAGCGAGGAGAGCATCCCTTCAGAACGAGAATT
CTTGGTGGTGTCACTCTGAGTCCGCGTCCCGATATCCATTGCAAGCAAAA
CATCTCGGATTTATCGGTTTGCGATACAGATCAAAAGGAATTGGCGGTGG
ATGAAAACTATTGCCTGTCGGTGGATCACTTGGGTCGTCCCGTTGATATC
TACAGTGATCCCGATTACCGCATGAAGTGCATTGGCTTCTGGAAGGAGAA
CCTCAAGTCCTACCTGATTACGTACGACGATTTGGATCCGCTGTCCAAGT
ATCGCTGCTGGGTCTATCAGCGTGCCGACCTCAACCGTGTCCTCATGTCG
CAGGCTGTGGGCGCATTCTGCAAACTGGAGCAAGATGTGACCTCGTGGAA
CCACTCGGAGGGCGCTGCCGTAGCCATCGATGCCGTGGAGTACGAAAGGG
AGCGTGACGACTGTCCCATGCACTTCGATGACGGATTGAATCCTTGGAAG
CCGTCGGATGCCTCCAACATCATATTTGATTGGGACTTTTACCGAGCAGG
AGCAGCGACACTAAAATTTCAACTGACTGGCCTCGTTATCGTGGTCTTAG
TCCAGGTTAGGAGTTTATTAGCTTAAAAGCTTTCTAGACCAT
BS22111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10217-RB | 1860 | CG10217-PB | 1..1860 | 17..1876 | 9300 | 100 | Plus |
| CG10217-RA | 1860 | CG10217-PA | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10217-RB | 2167 | CG10217-RB | 64..1923 | 17..1876 | 9300 | 100 | Plus |
| CG10217-RA | 2262 | CG10217-RA | 159..2018 | 17..1876 | 9300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23761619..23762432 | 1296..483 | 4070 | 100 | Minus |
| 3R | 32079331 | 3R | 23760981..23761562 | 1876..1295 | 2910 | 100 | Minus |
| 3R | 32079331 | 3R | 23762549..23762970 | 484..63 | 2110 | 100 | Minus |
| 3R | 32079331 | 3R | 23763057..23763105 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:11:05 has no hits.
BS22111.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:41 Download gff for
BS22111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10217-RB | 56..1913 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:35 Download gff for
BS22111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10217-RA | 159..2016 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:42 Download gff for
BS22111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10217-RA | 159..2016 | 17..1874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:42 Download gff for
BS22111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23760983..23761560 | 1297..1874 | 100 | <- | Minus |
| 3R | 23761619..23762430 | 485..1296 | 100 | <- | Minus |
| 3R | 23762549..23762967 | 66..484 | 100 | <- | Minus |
| 3R | 23763057..23763105 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:35 Download gff for
BS22111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19586705..19587282 | 1297..1874 | 100 | <- | Minus |
| arm_3R | 19587341..19588152 | 485..1296 | 100 | <- | Minus |
| arm_3R | 19588271..19588689 | 66..484 | 100 | <- | Minus |
| arm_3R | 19588779..19588827 | 17..65 | 100 | | Minus |
BS22111.pep Sequence
Translation from 16 to 1875
> BS22111.pep
MHYYLAAICLVGLMGSALGQYNLVQKDNCIIPKILQGSWFSWETGLPTLT
VIDATSMSSRGYCINYMRHKGDEYSFVFKERSKDCYHCVRTIIRTLNVFE
KFEGPCVGIPAGQEPTVDYVCRGVKDDQQLITLFNENFVPINCRSSLEGV
WHFTYQNRFRFTGVCDKPDARIQSCQTAGTQFLIQNQKFNVTYQQCEGME
GTFTGTVEFSCLGDWFVGKNHYFAVANTKESRKDEKYRCFLKNRDDDLYV
GVSITAECNTLKTPETSPERLKLTPVKAEFVEPGCTLPQNFSGEWVNTAN
IDADVSISETHINETYYPDKARYRKTIYVCRERRGNRVMMARLTVDGCQK
DYVCFDFMPRHHNIIRYRKGLAVIKDDFSTVCSWVQFPNSEAWKYDLFLA
RNPVPVRCPVAGKFNFTQRGEHPFRTRILGGVTLSPRPDIHCKQNISDLS
VCDTDQKELAVDENYCLSVDHLGRPVDIYSDPDYRMKCIGFWKENLKSYL
ITYDDLDPLSKYRCWVYQRADLNRVLMSQAVGAFCKLEQDVTSWNHSEGA
AVAIDAVEYERERDDCPMHFDDGLNPWKPSDASNIIFDWDFYRAGAATLK
FQLTGLVIVVLVQVRSLLA*
BS22111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10217-PB | 619 | CG10217-PB | 1..619 | 1..619 | 3380 | 100 | Plus |
| CG10217-PA | 619 | CG10217-PA | 1..619 | 1..619 | 3380 | 100 | Plus |
| CG16791-PD | 1046 | CG16791-PD | 424..798 | 28..415 | 244 | 24.1 | Plus |
| CG16791-PB | 1049 | CG16791-PB | 424..801 | 28..415 | 241 | 24.1 | Plus |
