BS22112.complete Sequence
2558 bp assembled on 2011-02-17
GenBank Submission: KX804653
> BS22112.complete
GAAGTTATCAGTCGACATGGCTAAAGCGTTGCCGCTCATCAGTTGTGACT
CTTGGGCCGATAGCATAAATGAGGAAGATGTGGAGCCCAAATTTAAGTAT
CACCGTCTCGCAAATGATTTAAAATACATGCTCAACGCTGATGTCATCAC
TTGTAGCGCTGTACACTTAAAGTTTCTTATATTTGGAACTTTCCGAGGAC
GTGTTTGTATATTTGACCATCAAGGAAACTCAGTCTACTCAAATCTTAGC
GCTAGCGAACGTCACACTCACCAAGTGGCAGTAAACAATATAGATGTAGA
TCATAAGGGCGAGTATGTGGCCACATGCTCCGACGACGGAAAAGTTAACA
TAACGGGATTGTTTAGCTCTGATAACAATCACAGTCTCAGCTTTGGCAAA
TTTATAAAGGTCGTATCACTGGAGCCCGATTCCAAAGCTCACATTAAAAG
ATTTGTAGTGGGCGACGACAAACTTATCTTGTACGAGCGAAACTTGCTAA
AGAAGCTTAAACCAGTTGAACTGTGCTCAGTCGAAGGCAGTGTTTTGTCA
ATCTGCTGGCATGGCAACTTTATTGCCTGGGCAAGTCACATAGGAGTTCG
AGTCTACGATTTAAACGAAAGATGCTCACTTGGATTAATAAAGTGGGAGG
TTCCTCCTCAGGAGCGATTAGAAAATTTTCGATGCCACCTTCGTTGGTCC
AACAAGCATACATTATTAATTGGCTGGGTAGACACTATTCGAGTTTGCGT
AATTCGAAAGAGAAATTCAATCGAAGCTTCAACTGGCAATCTGCCTGTCT
ACATTGTGGATCCAATCTCGACATTTCAAACAACTTTCTACGTATGTGGG
CTTGCACCATTATCTGCAAAGCAATTGGTTGTTCTTGGCTTTCGCAAGGA
AAAAAGCTCTTGTTTTAAAGCCCTACGACCTGTATTATGCGTTATTGAAT
ACAAAATGAATAATAGCGAGGAAATCTGCACAGACAGTTTAACTTTACGC
GGCTTTGAGGAGTACACCGTGAATGACTATAGTCTGGGTGGCATAATCGA
GGAGAATCGCTTTTATATTGTGGCCCCAAAGGATATTGTGGTAGCTAGTC
TTATTGAAACAGATGATCGTATAGAATGGTTGATTAAACACAGTAAATTT
GAGGAGGCAATGGAACTTATATCTGCGAATGGAGGTAACGTTCCCGTACT
TTCCGTTGCTAAACTTTATATCAACCATTTACTGGCGCTTAAGAAGTATG
ATGACGCAGCAAAACTTTGCCTCCGCATGCTAGGCAATGACAAAGTCCTT
TGGGAAGAGGAAGTTTTTAAGTTTGTAAAGTGTCAGCAGCTACGATCAGT
TAGCGCCTATCTGCCGACTTCAGACGAATGCAAACTTGATCCCCATGTAT
ACGAAATGGTTTTATACGAGTTTCTCAAATTTGATGTATGTGGTTTCCTG
AATCTTATCAAGGAATGGCCATCTCATCTTTATGACGGCCTGGCTGTTAT
TAACGCTATTCACGATAACTTTCGAAAGCACTATGCCAATCAGTTGCTGG
AATCATTGGCTCTTTTGTATTCCTATCAAGGCGACTTCGAAAGTGCTCTT
CGCATGTATTTAAAGTTGCAGAACAAGGATGTCTTCCAATTAATTCGACG
GTATGAGCTTTACGATGTCATTTCAAAACTGATTATTCCACTTATTCAAT
TGGATCGTGACTGCGCCTTTGAAATACTACTTGACAAGAAAAAAATAAAG
ACTGAGATAGTTGTCCACCAGCTAGAGCACAATCAAGAGTACCTGTACTG
GTACTTAGATTCTTTACTTAAAAAGGATCCCAGTAATGTGTTTCAAAAAA
AACTTATCTCCTTATATGCCATTTTCGATCGAAACAAACTATTGCCCTTT
CTAAAGCGTTCAAAGGACTATGACATTCAGGAGGCGTTGGTCATATGCAA
ACAGGAAAACTTTTATCCAGAAATAGTCTACCTGCTCGGGTGTATGGGTG
GCGTAGAAGCGTCCGAAGCACTTAATATTATTATTCATCGCATCAGAGAC
ATAGAAATGGCCATAGAGTTTTGCAAGGAGCACGATGACAGCGATCTTTG
GAATGCACTTATAAATGAATTTAGCAAGCACCCTGAAATTGTGACCAAAG
TTTTGGACGGCATAGTTGACTACTTTAGCCCAGCGGTGGTTGTTGGAAAG
ATCAAAATGGGACAGAACATTCCAAATCTTCGACAATCACTTATAAAAAT
GCTGCGCCACTACAATCTTCAAGGTGAAATTTTATCCTCCGCCCAACAAA
TTCAACTTAATGACTATTTTGAAATTCACTCGGAGATAGTCACCACGCAA
AGACGAGGTCAGCAGGTTTCCTACGAACAACTATGCTCATTGTGCCACCG
TCCAGTACTGATGGCAGGCACACACTTGTATTGTATAATCAGGTTAGAGT
GTGGTCATGTATACCATAAACCGTGCATACAAGGTGAATTGCTTAAAAAT
TGCAACGAGTGTAACCTTTGGAAGTTAACCGTGGGGAAATAGAAGCTTTC
TAGACCAT
BS22112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lt-RF | 2526 | CG18028-PF | 1..2526 | 17..2542 | 12630 | 100 | Plus |
| lt-RE | 2526 | CG18028-PE | 1..2526 | 17..2542 | 12630 | 100 | Plus |
| lt-RA | 2526 | CG18028-PA | 1..2526 | 17..2542 | 12630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lt-RF | 5316 | CG18028-RF | 102..2627 | 17..2542 | 12630 | 100 | Plus |
| lt-RE | 4404 | CG18028-RE | 102..2627 | 17..2542 | 12630 | 100 | Plus |
| lt-RA | 2804 | CG18028-RA | 102..2627 | 17..2542 | 12630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22938904..22939307 | 1213..1616 | 2020 | 100 | Plus |
| 2L | 23513712 | 2L | 22940072..22940446 | 2168..2542 | 1875 | 100 | Plus |
| 2L | 23513712 | 2L | 22925565..22925919 | 461..815 | 1775 | 100 | Plus |
| 2L | 23513712 | 2L | 22927438..22927765 | 816..1143 | 1640 | 100 | Plus |
| 2L | 23513712 | 2L | 22939594..22939834 | 1801..2041 | 1205 | 100 | Plus |
| 2L | 23513712 | 2L | 22939354..22939540 | 1615..1801 | 935 | 100 | Plus |
| 2L | 23513712 | 2L | 22925158..22925332 | 171..345 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 22939887..22940013 | 2042..2168 | 635 | 100 | Plus |
| 2L | 23513712 | 2L | 22924982..22925107 | 47..172 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 22925381..22925499 | 344..462 | 595 | 100 | Plus |
| 2L | 23513712 | 2L | 22938772..22938842 | 1142..1212 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:21:55 has no hits.
BS22112.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:17 Download gff for
BS22112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RA | 110..2629 | 17..2536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:50 Download gff for
BS22112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RA | 102..2621 | 17..2536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:52 Download gff for
BS22112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lt-RA | 102..2621 | 17..2536 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:52 Download gff for
BS22112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22939354..22939540 | 1615..1801 | 100 | -> | Plus |
| 2L | 22939595..22939834 | 1802..2041 | 100 | -> | Plus |
| 2L | 22939887..22940013 | 2042..2168 | 100 | -> | Plus |
| 2L | 22927438..22927765 | 816..1143 | 100 | -> | Plus |
| 2L | 22938774..22938842 | 1144..1212 | 100 | -> | Plus |
| 2L | 22925566..22925919 | 462..815 | 100 | -> | Plus |
| 2L | 22938904..22939305 | 1213..1614 | 100 | -> | Plus |
| 2L | 22924896..22924925 | 17..46 | 100 | -> | Plus |
| 2L | 22924982..22925107 | 47..172 | 100 | -> | Plus |
| 2L | 22925160..22925330 | 173..343 | 100 | -> | Plus |
| 2L | 22925381..22925498 | 344..461 | 100 | -> | Plus |
| 2L | 22940073..22940440 | 2169..2536 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:50 Download gff for
BS22112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22817714..22817839 | 47..172 | 100 | -> | Plus |
| arm_2L | 22817892..22818062 | 173..343 | 100 | -> | Plus |
| arm_2L | 22818113..22818230 | 344..461 | 100 | -> | Plus |
| arm_2L | 22817628..22817657 | 17..46 | 100 | -> | Plus |
| arm_2L | 22818298..22818651 | 462..815 | 100 | -> | Plus |
| arm_2L | 22820170..22820497 | 816..1143 | 100 | -> | Plus |
| arm_2L | 22831506..22831574 | 1144..1212 | 100 | -> | Plus |
| arm_2L | 22831636..22832037 | 1213..1614 | 100 | -> | Plus |
| arm_2L | 22832086..22832272 | 1615..1801 | 100 | -> | Plus |
| arm_2L | 22832327..22832566 | 1802..2041 | 100 | -> | Plus |
| arm_2L | 22832619..22832745 | 2042..2168 | 100 | -> | Plus |
| arm_2L | 22832805..22833172 | 2169..2536 | 100 | | Plus |
BS22112.pep Sequence
Translation from 16 to 2541
> BS22112.pep
MAKALPLISCDSWADSINEEDVEPKFKYHRLANDLKYMLNADVITCSAVH
LKFLIFGTFRGRVCIFDHQGNSVYSNLSASERHTHQVAVNNIDVDHKGEY
VATCSDDGKVNITGLFSSDNNHSLSFGKFIKVVSLEPDSKAHIKRFVVGD
DKLILYERNLLKKLKPVELCSVEGSVLSICWHGNFIAWASHIGVRVYDLN
ERCSLGLIKWEVPPQERLENFRCHLRWSNKHTLLIGWVDTIRVCVIRKRN
SIEASTGNLPVYIVDPISTFQTTFYVCGLAPLSAKQLVVLGFRKEKSSCF
KALRPVLCVIEYKMNNSEEICTDSLTLRGFEEYTVNDYSLGGIIEENRFY
IVAPKDIVVASLIETDDRIEWLIKHSKFEEAMELISANGGNVPVLSVAKL
YINHLLALKKYDDAAKLCLRMLGNDKVLWEEEVFKFVKCQQLRSVSAYLP
TSDECKLDPHVYEMVLYEFLKFDVCGFLNLIKEWPSHLYDGLAVINAIHD
NFRKHYANQLLESLALLYSYQGDFESALRMYLKLQNKDVFQLIRRYELYD
VISKLIIPLIQLDRDCAFEILLDKKKIKTEIVVHQLEHNQEYLYWYLDSL
LKKDPSNVFQKKLISLYAIFDRNKLLPFLKRSKDYDIQEALVICKQENFY
PEIVYLLGCMGGVEASEALNIIIHRIRDIEMAIEFCKEHDDSDLWNALIN
EFSKHPEIVTKVLDGIVDYFSPAVVVGKIKMGQNIPNLRQSLIKMLRHYN
LQGEILSSAQQIQLNDYFEIHSEIVTTQRRGQQVSYEQLCSLCHRPVLMA
GTHLYCIIRLECGHVYHKPCIQGELLKNCNECNLWKLTVGK*
BS22112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lt-PF | 841 | CG18028-PF | 1..841 | 1..841 | 4433 | 100 | Plus |
| lt-PE | 841 | CG18028-PE | 1..841 | 1..841 | 4433 | 100 | Plus |
| lt-PA | 841 | CG18028-PA | 1..841 | 1..841 | 4433 | 100 | Plus |
| lt-PC | 528 | CG18028-PC | 1..528 | 314..841 | 2771 | 100 | Plus |
