BS22129.complete Sequence
2234 bp assembled on 2011-02-17
GenBank Submission: KX804345
> BS22129.complete
GAAGTTATCAGTCGACATGTCTTCGGCCAGAGACCTTATCAAAGTCGACA
TAGAATGGGGCATGGAGCGCCTGGTGCGAGCTCAGCAAGTGGTGGAGCTG
CGGCCCTATGACATCGAGTCCTGGAGTGTCATGATCCGAGAGGCCCAAAC
GCGGCCAATCCACGAAGTACGCAGTCTTTACGAGTCGCTAGTTAATGTGT
TTCCGACAACCGCTCGGTACTGGAAGCTATACATTGAGATGGAGATGCGC
AGCCGGTACTATGAACGCGTGGAGAAACTTTTTCAACGCTGCCTAGTCAA
GATTTTGAACATCGACCTCTGGAAGCTCTATCTTACCTACGTGAAGGAAA
CCAAGTCGGGTCTAAGTACTCACAAAGAAAAAATGGCCCAGGCTTATGAT
TTTGCACTGGAGAAAATCGGCATGGATCTACACTCGTTCAGCATCTGGCA
GGATTACATATACTTTCTGCGGGGCGTTGAAGCAGTGGGCAACTATGCAG
AGAACCAAAAGATCACAGCAGTGCGCCGCGTCTATCAAAAGGCTGTAGTC
ACACCTATCGTGGGCATCGAGCAGTTGTGGAAGGACTATATCGCATTCGA
GCAAAACATAAACCCGATTATATCAGAGAAGATGAGTCTGGAGCGATCTA
AGGATTACATGAACGCTCGTCGTGTTGCCAAAGAGTTGGAATACCACACA
AAGGGTCTCAATCGCAATCTGCCAGCCGTCCCACCCACACTCACAAAAGA
GGAGGTGAAGCAAGTGGAGCTGTGGAAGCGCTTTATCACGTATGAGAAGT
CTAATCCCTTGCGCACTGAAGATACGGCCCTAGTAACCCGTCGTGTCATG
TTCGCCACGGAGCAATGTTTGCTGGTGCTCACCCACCACCCGGCAGTGTG
GCACCAGGCCTCCCAATTCCTGGACACCAGTGCTCGCGTGCTCACCGAAA
AAGGCGACGTCCAGGCGGCCAAGATTTTTGCGGACGAGTGTGCTAATATA
CTGGAACGGTCTATAAACGGCGTGCTAAACCGAAATGCGTTGCTATATTT
TGCCTATGCGGACTTTGAAGAAGGACGGCTCAAGTACGAGAAGGTGCACA
CTATGTACAACAAGCTGTTACAGTTGCCAGACATTGATCCCACATTGGTC
TATGTTCAGTACATGAAGTTCGCCCGTCGTGCTGAGGGGATCAAGTCGGC
CCGTAGCATATTTAAGAAAGCTCGGGAGGACGTAAGGTCGCGCTATCACA
TTTTCGTGGCCGCTGCTTTAATGGAGTATTATTGCTCCAAGGACAAAGAA
ATTGCGTTCCGCATCTTCGAGCTGGGATTGAAGCGTTTTGGTGGCAGTCC
AGAGTACGTGATGTGCTACATTGACTACCTGTCCCATCTAAACGAGGACA
ATAATACGCGCGTCCTGTTTGAACGGGTACTTAGTTCAGGTGGTTTGTCG
CCGCACAAGAGTGTTGAGGTCTGGAATCGCTTCCTCGAGTTCGAATCTAA
TATTGGGGATCTCTCCAGCATCGTTAAGGTCGAACGTCGCCGTAGTGCCG
TTTTCGAAAACCTTAAAGAGTATGAGGGCAAGGAGACCGCCCAGCTGGTT
GACCGTTACAAATTTCTGGACCTTTACCCCTGCACCAGCACCGAGCTCAA
GTCCATAGGATATGCTGAGAATGTGGGCATTATACTGAACAAGGTGGGTG
GTGGAGCTCAAAGCCAGAACACCGGAGAGGTCGAAACAGATAGCGAGGCA
ACGCCACCATTGCCACGTCCGGATTTCTCCCAGATGATTCCATTCAAGCC
GCGTCCATGTGCTCATCCTGGTGCCCATCCACTTGCAGGTGGTGTATTTC
CGCAGCCGCCAGCTCTGGCCGCTTTGTGCGCCACCCTGCCTCCACCGAAC
TCCTTCCGTGGACCGTTCGTCAGCGTAGAGCTACTATTCGACATTTTCAT
GCGTCTCAATCTTCCGGACTCTGCACCGCAACCGAATGGAGACAACGAAT
TGTCGCCTAAGATCTTCGATCTGGCCAAGTCGGTTCACTGGATCGTGGAT
ACAAGTACGTATACGGGGGTGCAGCACAGTGTTACGGCCGTTCCACCGCG
CCGGCGACGACTGCTGCCTGGGGGCGATGATAGTGACGACGAACTGCAGA
CCGCTGTGCCGCCCTCCCACGATATATATCGCCTGCGTCAGCTAAAGCGT
TTCGCCAAGTCTAATTAAAAGCTTTCTAGACCAT
BS22129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(f)-RG | 2202 | CG17170-PG | 1..2202 | 17..2218 | 11010 | 100 | Plus |
| su(f)-RE | 2202 | CG17170-PE | 1..2202 | 17..2218 | 11010 | 100 | Plus |
| su(f)-RF | 2298 | CG17170-PF | 1036..2298 | 956..2218 | 6315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(f)-RG | 2668 | CG17170-RG | 382..2583 | 17..2218 | 11010 | 100 | Plus |
| su(f)-RE | 2574 | CG17170-RE | 288..2489 | 17..2218 | 11010 | 100 | Plus |
| su(f)-RF | 2909 | CG17170-RF | 1323..2585 | 956..2218 | 6315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23099474..23099888 | 1147..1561 | 2075 | 100 | Plus |
| X | 23542271 | X | 23097793..23098115 | 53..375 | 1615 | 100 | Plus |
| X | 23542271 | X | 23098614..23098918 | 652..956 | 1525 | 100 | Plus |
| X | 23542271 | X | 23100500..23100802 | 1668..1970 | 1515 | 100 | Plus |
| X | 23542271 | X | 23098280..23098556 | 376..652 | 1385 | 100 | Plus |
| X | 23542271 | X | 23100860..23101107 | 1971..2218 | 1240 | 100 | Plus |
| X | 23542271 | X | 23099218..23099411 | 956..1149 | 970 | 100 | Plus |
| X | 23542271 | X | 23099941..23100052 | 1558..1669 | 545 | 99.1 | Plus |
| X | 23542271 | X | 23097696..23097732 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:17:49 has no hits.
BS22129.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:17 Download gff for
BS22129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(f)-RE | 305..2504 | 17..2216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:19 Download gff for
BS22129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(f)-RE | 288..2487 | 17..2216 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:11 Download gff for
BS22129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(f)-RE | 288..2487 | 17..2216 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:11 Download gff for
BS22129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23099218..23099409 | 956..1147 | 100 | -> | Plus |
| X | 23097696..23097731 | 17..52 | 100 | -> | Plus |
| X | 23097793..23098115 | 53..375 | 100 | -> | Plus |
| X | 23098280..23098555 | 376..651 | 100 | -> | Plus |
| X | 23098614..23098917 | 652..955 | 100 | -> | Plus |
| X | 23099475..23099888 | 1148..1561 | 100 | -> | Plus |
| X | 23099945..23100052 | 1562..1669 | 100 | -> | Plus |
| X | 23100502..23100802 | 1670..1970 | 100 | -> | Plus |
| X | 23100860..23101105 | 1971..2216 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:19 Download gff for
BS22129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 76514..76549 | 17..52 | 100 | -> | Plus |
| XHet | 76611..76933 | 53..375 | 100 | -> | Plus |
| XHet | 77098..77373 | 376..651 | 100 | -> | Plus |
| XHet | 77432..77735 | 652..955 | 100 | -> | Plus |
| XHet | 78036..78227 | 956..1147 | 100 | -> | Plus |
| XHet | 78293..78706 | 1148..1561 | 100 | -> | Plus |
| XHet | 78763..78870 | 1562..1669 | 100 | -> | Plus |
| XHet | 79320..79620 | 1670..1970 | 100 | -> | Plus |
| XHet | 79678..79923 | 1971..2216 | 100 | | Plus |
BS22129.pep Sequence
Translation from 16 to 2217
> BS22129.pep
MSSARDLIKVDIEWGMERLVRAQQVVELRPYDIESWSVMIREAQTRPIHE
VRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLFQRCLVKILNID
LWKLYLTYVKETKSGLSTHKEKMAQAYDFALEKIGMDLHSFSIWQDYIYF
LRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINP
IISEKMSLERSKDYMNARRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQV
ELWKRFITYEKSNPLRTEDTALVTRRVMFATEQCLLVLTHHPAVWHQASQ
FLDTSARVLTEKGDVQAAKIFADECANILERSINGVLNRNALLYFAYADF
EEGRLKYEKVHTMYNKLLQLPDIDPTLVYVQYMKFARRAEGIKSARSIFK
KAREDVRSRYHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMC
YIDYLSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLS
SIVKVERRRSAVFENLKEYEGKETAQLVDRYKFLDLYPCTSTELKSIGYA
ENVGIILNKVGGGAQSQNTGEVETDSEATPPLPRPDFSQMIPFKPRPCAH
PGAHPLAGGVFPQPPALAALCATLPPPNSFRGPFVSVELLFDIFMRLNLP
DSAPQPNGDNELSPKIFDLAKSVHWIVDTSTYTGVQHSVTAVPPRRRRLL
PGGDDSDDELQTAVPPSHDIYRLRQLKRFAKSN*
BS22129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(f)-PG | 733 | CG17170-PG | 1..733 | 1..733 | 3819 | 100 | Plus |
| su(f)-PE | 733 | CG17170-PE | 1..733 | 1..733 | 3819 | 100 | Plus |
| su(f)-PF | 765 | CG17170-PF | 1..765 | 1..733 | 3776 | 95.8 | Plus |
