BS22130.complete Sequence
2174 bp assembled on 2011-02-17
GenBank Submission: KX803956
> BS22130.complete
GAAGTTATCAGTCGACATGACGCTGGACGTGGGCGGCGTCGCCAGGGGAC
TGCTCACCTGGGACAAACAGGAGCACCTGGTCAAGCTGGCCATTCTCATC
CTGGCAGCGGTTTTATCATTTGCCACACGCTTGTTCTCTGTGCTGCGATT
CGAAAGCGTAATCCATGAGTTCGATCCGTACTTCAACTACCGCACCACGC
GGTTTCTGGCGGAGCAGGGCTTTTACAAGTTCCACAACTGGTTCGATGAC
CGCGCCTGGTATCCCCTGGGCCGCATCATCGGCGGCACCATCTATCCCGG
GCTGATGCTCACCTCGGCGGCCCTGTACCGCCTGATGTGGCTGCTCAATG
TGACCATCGACATACGGAACGTGTGCGTCTTCCTGGCGCCCTTCTTCTCC
TCGCTGACCACGCTGGTGACCTACGCCCTCACAAAGGAGATACACAGCAC
TGGAGCTGGACTGGTGGCCGCCGCTTTGATATCCATCGTTCCCGGGTATA
TCTCTCGATCCGTGGCGGGATCGTACGACAATGAAGGCATCGCCATTTTC
TGCATGCTCTTCACCTACTATTTGTGGATCAAGGCGGTAAAGACGGGCAC
GATCTTTTGGTCGGCTATGTCGGCATTGGCCTACTTCTATATGGTCTCCT
CGTGGGGTGGCTATGTCTTCCTGATTAACCTAATCCCGCTGCACGTGCTG
GCGCTGATGATCACCGGACGTTTCTCGCACAGGATCTACATAGCATACAG
CACGCTATACTGCGTCGGCACCATTCTGTCGATGCAGATCTCGTTTGTGG
GATTCCAACCCATCCAGAGCTCCGAACACATGCTGGCACTGGGAACCTTT
GGCCTGTGCCAGATTCACGCTTTCGTCGACTATCTGCGCTCGCGCATTCC
CAAGGATCACTTCGATCTGCTCTTCAAGACGTTGGTTTCCAGTGTTTTGA
CTGTGGTGTTCGTCGTGGGTACCCTGCTCACGCTTACCGGGAAAGTCTCC
CCCTGGACCGGCAGATTTTACTCGCTACTAGATCCATCCTATGCCAAGAA
TCACATTCCAATCATCGCCTCCGTATCGGAGCATCAGCCTACATCCTGGT
CGTCTTTCTATTTTGATCTGCAGATCCTGGTCTTCCTCTTTCCCGCTGGC
CTTTATTTCTGCTTTTCCAAGCTGACGGACTCGAACATCTTTATTATTTT
GTATGGCGTCACCAGTATTTATTTCGCCGGAGTGATGGTGCGTCTAATGC
TGGTCCTGGCGCCCGTGATGTGTGTGCTATCCGGAATTGCCATTTCGCAT
CTGCTGGCCAAGTATATCAAGAGCGTTGATGCCGGAAGCTCATCGAAGCA
GGGAGTAGAAAGCAAGCGGCAGCACAAGAAGCTGGAACAGCAGACGGGAG
GCGTGAAGAGCGAGGTGGCCATTGGATTCGTGGGTGTCATCACTCTGATG
CTTATAGTGTACACGCTGCACTGCACCTGGGTCACCTCGGAGGCCTACTC
CTCGCCCAGTATTGTGTTGAGTGCCAGGTCGCACGATGGCGGCCGCATCA
TTTTCGATGACTTCCGCGAGGCCTACTACTGGCTGCAGATGAACACTCCG
GAGGACGCTCGCATAATGTCCTGGTGGGACTACGGCTACCAGATAACGGC
CATGGCCAATCGGACGATATTGGTGGATAACAATACTTGGAACAACACAC
ATATATCGCGCGTTGGCCAGGCGATGGCCTCTTCGGAGGAGAAAGCCTAC
GAGATAATGAGGGAACTGGATGTGGACTACGTTCTCGTGATTTTCGGAGG
GCTCACTGGCTACTCATCGGACGATATCAACAAGTTCCTGTGGATGGTGC
GCATTGGCGGCAGCACGGATCGTGGTGCGCACATCCGCGAAAAGGACTAC
TATGCGGCCAACGGAGAGTTCCGAGTGGACAAGGAGGGCTCACCCACACT
GCTCAATTGTTTGATGTACAAGATGTGCTACTATCGCTTTGGGCAAATGT
ACACGGAAGGTGGCAAAGCCCAGGGCTACGATCGAGTTCGTGCCGCCGAG
ATCGGCAACAAGGACTTTGAACTGGATGTCATGGAGGAGGCGTACACCAC
GGAGCACTGGCTGGTGCGCATCTACAAGGTTAAGGATCTGCCGAATCGTG
GAGTCTGAAAGCTTTCTAGACCAT
BS22130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1518-RC | 2142 | CG1518-PC | 1..2142 | 17..2158 | 10710 | 100 | Plus |
| CG1518-RA | 2142 | CG1518-PA | 1..2142 | 17..2158 | 10710 | 100 | Plus |
| OstStt3-RA | 2325 | CG7748-PA | 1587..1900 | 1543..1856 | 415 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1518-RC | 2755 | CG1518-RC | 228..2369 | 17..2158 | 10710 | 100 | Plus |
| CG1518-RA | 2676 | CG1518-RA | 228..2369 | 17..2158 | 10710 | 100 | Plus |
| OstStt3-RA | 2703 | CG7748-RA | 1670..1983 | 1543..1856 | 415 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21050271..21050827 | 2158..1602 | 2785 | 100 | Minus |
| X | 23542271 | X | 21051125..21051610 | 1604..1119 | 2430 | 100 | Minus |
| X | 23542271 | X | 21052409..21052799 | 836..446 | 1955 | 100 | Minus |
| X | 23542271 | X | 21052898..21053226 | 445..117 | 1645 | 100 | Minus |
| X | 23542271 | X | 21051916..21052208 | 1123..831 | 1450 | 99.7 | Minus |
| X | 23542271 | X | 21053611..21053710 | 116..17 | 500 | 100 | Minus |
| 3R | 32079331 | 3R | 25067539..25067852 | 1856..1543 | 415 | 75.5 | Minus |
| 3R | 32079331 | 3R | 25069273..25069419 | 307..161 | 225 | 76.9 | Minus |
| 3R | 32079331 | 3R | 25068449..25068541 | 1131..1039 | 210 | 81.7 | Minus |
| 3R | 32079331 | 3R | 25068884..25069097 | 696..483 | 200 | 72.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:27:34 has no hits.
BS22130.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:19 Download gff for
BS22130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1518-RA | 407..2547 | 17..2157 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:34 Download gff for
BS22130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1518-RA | 228..2368 | 17..2157 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:16 Download gff for
BS22130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1518-RA | 228..2368 | 17..2157 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:16 Download gff for
BS22130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21050272..21050825 | 1604..2157 | 100 | <- | Minus |
| X | 21051126..21051605 | 1124..1603 | 100 | <- | Minus |
| X | 21051916..21052203 | 836..1123 | 100 | <- | Minus |
| X | 21052410..21052799 | 446..835 | 100 | <- | Minus |
| X | 21052898..21053226 | 117..445 | 100 | <- | Minus |
| X | 21053611..21053710 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:34 Download gff for
BS22130.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20924638..20924737 | 17..116 | 100 | | Minus |
| arm_X | 20921299..20921852 | 1604..2157 | 100 | <- | Minus |
| arm_X | 20922153..20922632 | 1124..1603 | 100 | <- | Minus |
| arm_X | 20922943..20923230 | 836..1123 | 100 | <- | Minus |
| arm_X | 20923437..20923826 | 446..835 | 100 | <- | Minus |
| arm_X | 20923925..20924253 | 117..445 | 100 | <- | Minus |
BS22130.pep Sequence
Translation from 16 to 2157
> BS22130.pep
MTLDVGGVARGLLTWDKQEHLVKLAILILAAVLSFATRLFSVLRFESVIH
EFDPYFNYRTTRFLAEQGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMLTS
AALYRLMWLLNVTIDIRNVCVFLAPFFSSLTTLVTYALTKEIHSTGAGLV
AAALISIVPGYISRSVAGSYDNEGIAIFCMLFTYYLWIKAVKTGTIFWSA
MSALAYFYMVSSWGGYVFLINLIPLHVLALMITGRFSHRIYIAYSTLYCV
GTILSMQISFVGFQPIQSSEHMLALGTFGLCQIHAFVDYLRSRIPKDHFD
LLFKTLVSSVLTVVFVVGTLLTLTGKVSPWTGRFYSLLDPSYAKNHIPII
ASVSEHQPTSWSSFYFDLQILVFLFPAGLYFCFSKLTDSNIFIILYGVTS
IYFAGVMVRLMLVLAPVMCVLSGIAISHLLAKYIKSVDAGSSSKQGVESK
RQHKKLEQQTGGVKSEVAIGFVGVITLMLIVYTLHCTWVTSEAYSSPSIV
LSARSHDGGRIIFDDFREAYYWLQMNTPEDARIMSWWDYGYQITAMANRT
ILVDNNTWNNTHISRVGQAMASSEEKAYEIMRELDVDYVLVIFGGLTGYS
SDDINKFLWMVRIGGSTDRGAHIREKDYYAANGEFRVDKEGSPTLLNCLM
YKMCYYRFGQMYTEGGKAQGYDRVRAAEIGNKDFELDVMEEAYTTEHWLV
RIYKVKDLPNRGV*
BS22130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1518-PC | 713 | CG1518-PC | 1..713 | 1..713 | 3724 | 100 | Plus |
| CG1518-PA | 713 | CG1518-PA | 1..713 | 1..713 | 3724 | 100 | Plus |
| OstStt3-PA | 774 | CG7748-PA | 18..725 | 21..706 | 2202 | 58.1 | Plus |
