BS22132.complete Sequence
857 bp assembled on 2011-01-27
GenBank Submission: KX802777
> BS22132.complete
GAAGTTATCAGTCGACATGTCCTGCACCGTTTCCGAGCTGCCCAGTGGCT
GTCGATTGCGCGGCATGACTGCATCCTCACAGCAAAGTGCCGCCAACAAT
AGTGGCAACAATGGGAATGGCAATGGGAACGGTGGCGGCGGGGGCGTCGT
CGGAGGTGGCGGCAGCCTGGGCGGAGTATCGCCCACCGTGGGCGGCAGCG
TGGGAATCCTCGGCTCCACGTCCAACGTGCTGCAGGAGTCGAACGCGACC
ACGTTTCAGCGTCCGCAGTCGCAGAAGCCTTGCTGCTTCTGCTGGTGCTG
CTGCTGCTCCTGCTCCTGGGCCAAATGTCTGGCCATCAAGAATGCCGATG
AAAATGCCCCCACGAAGCGAGATCTGGTAAATGCCGAATTCTTGGATGGC
GAGCAACCCACACTGGAGGAAATCCGCAGCTGGGGCAAAAGCTTTGACAA
GCTGATGAAAAGTACAGCTGGTCGAAAGGTGTTCCAGAACTTCCTGCGCA
GCGAATTCAGTGAGGAGAACATCCTATTCTGGCTGGCCTGCGAGGATCTC
AAGAAGGAGAATAGCCCAGAGTTGGTGGAGGAGAAGGCGCGCCTCATCTA
CGAGGACTACATCTCGATCCTGTCGCCCAGGGAGGTGTCGCTGGACTCCA
GGGTCCGCGAGATTGTCAACCGGAACATGATCGAGCCCACGACGCACACC
TTCGACGAAGCTCAAATCCAGATCTACACACTGATGCACAGAGACTCATA
TCCGAGATTCCTAAACTCTCAAAAGTTCAAGACACTAGCTCAACTGCAAG
ACAACTCGAATGCCGGTTCCAAAGCGGATAGTCCAACTTAGAAGCTTTCT
AGACCAT
BS22132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhit-RB | 825 | CG5036-PB | 1..825 | 17..841 | 4125 | 100 | Plus |
| Dhit-RC | 816 | CG5036-PC | 1..816 | 17..841 | 3955 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhit-RB | 2873 | CG5036-RB | 1689..2515 | 16..842 | 4135 | 100 | Plus |
| Dhit-RC | 4762 | CG5036-RC | 1689..2506 | 16..842 | 3965 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17795126..17795429 | 16..319 | 1520 | 100 | Plus |
| 2R | 25286936 | 2R | 17797325..17797616 | 465..756 | 1460 | 100 | Plus |
| 2R | 25286936 | 2R | 17797683..17797770 | 755..842 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 17797053..17797131 | 327..405 | 395 | 100 | Plus |
| 2R | 25286936 | 2R | 17797202..17797263 | 406..467 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:57:04 has no hits.
BS22132.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:19 Download gff for
BS22132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5036-RB | 1678..2502 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:25 Download gff for
BS22132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5036-RB | 1690..2514 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:37 Download gff for
BS22132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhit-RB | 1690..2514 | 17..841 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:37 Download gff for
BS22132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17795127..17795428 | 17..318 | 100 | -> | Plus |
| 2R | 17797046..17797131 | 319..405 | 93 | -> | Plus |
| 2R | 17797202..17797263 | 406..467 | 100 | -> | Plus |
| 2R | 17797328..17797616 | 468..756 | 100 | -> | Plus |
| 2R | 17797685..17797769 | 757..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:25 Download gff for
BS22132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13682632..13682933 | 17..318 | 100 | -> | Plus |
| arm_2R | 13684551..13684636 | 319..405 | 93 | -> | Plus |
| arm_2R | 13684707..13684768 | 406..467 | 100 | -> | Plus |
| arm_2R | 13684833..13685121 | 468..756 | 100 | -> | Plus |
| arm_2R | 13685190..13685274 | 757..841 | 100 | | Plus |
BS22132.pep Sequence
Translation from 16 to 840
> BS22132.pep
MSCTVSELPSGCRLRGMTASSQQSAANNSGNNGNGNGNGGGGGVVGGGGS
LGGVSPTVGGSVGILGSTSNVLQESNATTFQRPQSQKPCCFCWCCCCSCS
WAKCLAIKNADENAPTKRDLVNAEFLDGEQPTLEEIRSWGKSFDKLMKST
AGRKVFQNFLRSEFSEENILFWLACEDLKKENSPELVEEKARLIYEDYIS
ILSPREVSLDSRVREIVNRNMIEPTTHTFDEAQIQIYTLMHRDSYPRFLN
SQKFKTLAQLQDNSNAGSKADSPT*
BS22132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhit-PB | 274 | CG5036-PB | 1..274 | 1..274 | 1452 | 100 | Plus |
| Dhit-PC | 271 | CG5036-PC | 1..271 | 1..274 | 1418 | 98.9 | Plus |
| CG42450-PA | 1244 | CG42450-PA | 482..616 | 121..257 | 217 | 34.1 | Plus |
| CG42450-PB | 1280 | CG42450-PB | 482..616 | 121..257 | 217 | 34.1 | Plus |
| loco-PF | 782 | CG5248-PF | 64..190 | 138..264 | 212 | 33.9 | Plus |
