BS22153.complete Sequence
1685 bp assembled on 2012-04-25
GenBank Submission: KX801418
> BS22153.complete
GAAGTTATCAGTCGACATGACGATGGCCGCCTGTTATGCCAACTACGACA
TGTCGTCCCTGTCGCACGGCATGTCGGCCCTGTCCGCCCTGCAGCAGCAA
CAGCAGCAGCAACAGCAGCAGCACAGCCAGACGCAGCAGCAGCATCATCA
CCAGCAGCAGCAGCAACACATGTACCACGCCGCCGTGGCTGCCCACCAGC
AGCAGTTGCTGCAACAGCAGCAGCAGCAGCAACACCACCGCCATCACCAC
CAGCCCGCCAACACCAGCAGCAGCAGCAACTCGCGCCACAGCCATGCGGC
GGCGACCCAAACGCAGGTCGCCGCCGCGGTTGCCAACAGCAGACAACAAC
AACAACAGCAACAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGACTGCC
AGCAGCAACAGCAACGCAGCCCCCGCTCCATCGCCGCAGAAGGACTACAG
CATCCCGCTGCACGTGGACTGCAGCGTGGAGTACGAGCTGCCCAACCAGC
CCAAGCCGCCGGCGGGCCAGAGAGTGGAGCCCCTGCTGATGATCCACCCG
TGCTACTTCCGCAAGATGGAGTCGCAGCGGCGCAGCCCGTTCGTGAACAA
CATGCATGCGACCGCGCGGGCGGTGAGCAGCAGCTCGCTGAGCAGCGGAG
CGGCCCTGGGCGGAGGCGGAAGCGGTGCGGCGGTGGCCACGGCGCCCAGC
AGTAGTGCCGCGCGGCGTGGAGCCCGGGCGGCTACGAGCGCCCAGCAGCA
GCAACAACAGCAGCAACGCTACCAACAGCAACAGCAGCAACTGCGGCAAC
AGCACCAGCAGATGTCGCAGATGTCGCAGCAGGCCCACTATCCCCAGCAA
CAGTCTAGTCTGGTCCGCCAGCACCAGCAGCAGCAACAGCAGCAGCAGCA
GCAGCAACGTGCCAGCAGCAACCAAAGCCAACGCCAAAGCCAAAGTCAGA
GCCAGAGCCAGAGCCATGCAGCCAACTCAGCGGCGGCAGCTGCGGCCCAG
GCCTCGATAGCCGCCGCAGCCGCCGGCCAGTGGGATCAACTGGCTGCGCT
GGCCGCCCGCACCGCCCTCACGCCGCACCACATGCTGCATCCCCACAGCC
ACTACGCGGCCAAGGGTAGTGGCGGCGGAGCAGGGGGCGGGAAGCGGGAC
GCCATGATCTCCGGCAGCTACGGACAGACGGCGGTCGCCTCGGGGAAGCT
GCAACAGTCGCAGGTGCAGCAGCAGCAGCCACAGCAGCAACAGCAACACT
GCCTGCCTCCGCCGCCGTGGGACGCGACGTCCATGCTGATGGACCGCTCG
CCGATGGCCACAGTTCCTAGCAATTATCAGGCCGGCCCTGACACCAATCC
CATGCGCCTCTACTCGGCCACGCCCACCGCCGGAGCGGCCTCGGGCGGGT
CGGCGTCGGTGGGCGGAGGCGGGGCGGTGAGTGGTGCGGGGGCGACGGGA
GCAGTGAACACGGCCACCGACAAGTTGAGCGGAAAGTACCGCCAGTACTT
GCGGTCCCAGCGGATGCACCCGTACGCGGCGGCCGCCTCGCTCAACTTGG
CAGCCGCCGCCGCTGCCGCCGGCCAGACCTCGTTTGTGCCGTTCAGTTCG
GCGGCCACGGCGGTGGCGGCCACGCCCACATTCCAGCACCTGCCGCAGAT
CTCCTGCTACAACGTGTGAAAGCTTTCTAGACCAT
BS22153.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:00:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| corto-RD | 1653 | CG2530-PD | 1..1653 | 17..1669 | 8265 | 100 | Plus |
| corto-RC | 1653 | CG2530-PC | 1..1653 | 17..1669 | 8265 | 100 | Plus |
| corto-RB | 1653 | CG2530-PB | 1..1653 | 17..1669 | 8265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| corto-RD | 3352 | CG2530-RD | 1048..2700 | 17..1669 | 8265 | 100 | Plus |
| corto-RC | 9294 | CG2530-RC | 1048..2700 | 17..1669 | 8265 | 100 | Plus |
| corto-RB | 3537 | CG2530-RB | 688..2340 | 17..1669 | 8265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5084373..5086025 | 1669..17 | 8265 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7598..7681 | 422..510 | 118 | 62.9 | Plus |
BS22153.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:05 Download gff for
BS22153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| corto-RA | 662..2313 | 17..1668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:55 Download gff for
BS22153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| corto-RB | 1003..2654 | 17..1668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:15 Download gff for
BS22153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| corto-RB | 688..2339 | 17..1668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:15 Download gff for
BS22153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5084374..5086025 | 17..1668 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:55 Download gff for
BS22153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 910096..911747 | 17..1668 | 100 | | Minus |
BS22153.pep Sequence
Translation from 16 to 1668
> BS22153.pep
MTMAACYANYDMSSLSHGMSALSALQQQQQQQQQQHSQTQQQHHHQQQQQ
HMYHAAVAAHQQQLLQQQQQQQHHRHHHQPANTSSSSNSRHSHAAATQTQ
VAAAVANSRQQQQQQQQQQQQQQQQQTASSNSNAAPAPSPQKDYSIPLHV
DCSVEYELPNQPKPPAGQRVEPLLMIHPCYFRKMESQRRSPFVNNMHATA
RAVSSSSLSSGAALGGGGSGAAVATAPSSSAARRGARAATSAQQQQQQQQ
RYQQQQQQLRQQHQQMSQMSQQAHYPQQQSSLVRQHQQQQQQQQQQQRAS
SNQSQRQSQSQSQSQSHAANSAAAAAAQASIAAAAAGQWDQLAALAARTA
LTPHHMLHPHSHYAAKGSGGGAGGGKRDAMISGSYGQTAVASGKLQQSQV
QQQQPQQQQQHCLPPPPWDATSMLMDRSPMATVPSNYQAGPDTNPMRLYS
ATPTAGAASGGSASVGGGGAVSGAGATGAVNTATDKLSGKYRQYLRSQRM
HPYAAAASLNLAAAAAAAGQTSFVPFSSAATAVAATPTFQHLPQISCYNV
*
BS22153.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| corto-PD | 550 | CG2530-PD | 1..550 | 1..550 | 2817 | 100 | Plus |
| corto-PC | 550 | CG2530-PC | 1..550 | 1..550 | 2817 | 100 | Plus |
| corto-PB | 550 | CG2530-PB | 1..550 | 1..550 | 2817 | 100 | Plus |
| corto-PE | 550 | CG2530-PE | 1..550 | 1..550 | 2817 | 100 | Plus |
| corto-PA | 550 | CG2530-PA | 1..550 | 1..550 | 2817 | 100 | Plus |
