BS22161.complete Sequence
2498 bp assembled on 2011-02-17
GenBank Submission: KX800749
> BS22161.complete
GAAGTTATCAGTCGACATGAGTGCGGCCAAGAAGTACAAGCCCATGGACA
CAACTGAGCTGCACGAGAACACAGAGAATATTGCCGCCTGCCTGAAGAAG
GCCGAGAACGTCGCCCCCACCGCTGCTGCCGCCTCGAGCGTGGGCCGCAG
TGCCTTCGCTGCCCAAAACATGAATTCTGCGTCCACCAACGGCGAGCGCC
TGCCAAACTTCTCCAAGCTAGGCGGCAGCCATGGCGAGATCCGCACGGCT
TCAACTACCTCAAATCTCCTCAATCGCATGGGGGCTATTCACAACAGCAA
GCCTGGCGATGTCAAGAAGATAGTGATTAAGAACTTTAAGGATAAGCCTA
CACTGCCCGATAACTATTCCAAGGACACGTACGTGAAGCTTGAAGAAGCC
GTTATCGCCATCCAACTCTCCAAGCCCATTAAATATTCGCTGGAGGAGCT
CTACCAGGCGGTGGTGAACATGTGTAGCCACAAGATGGATGCACAATTAT
ACGCGAAACTCAAGGAGCTAACAGAGCAACACGTAAAGCGCAATATTAAG
CTCAAGGAGCTCACCGGCGGTAGCATGGACAAACTGATTTTGCTGGAAAA
GATCAACCACTGGTGGCTCTCGTTCTGCCAACAAATGATCATGATTCGCA
GCATATTCTTGTATATGGATCGAACTTATGTGCTGCAAAATTCGACCGTT
CACTCGATTTGGGACATGGGGCTGGACCTTTTTCGCATCCATTTTGCTCA
AAACAGCGTTGTCCAAAAGCGAACCGTCGACGGTTTACTAACGCTTATTG
AAAAAGAACGACAAGGCTCCACCGTGGACCGTGGTTTGCTGAAGAGCTTG
GTTCGCATGTTATGCGACCTGCAGATCTACACCAGCTCCTTTGAGGAGAA
GTTCCTCGACGCAACCAATCAATTGTATAAGGCTGAGAGTCAACGCAAGA
TGCAAGAACTGGAAGTTCCCGAGTACTTACAACACGTCAACAAGCGTTTG
GCCGAGGAGAACGAGCGTTTGCGTCACTATCTGGACTCGAGCACCAAACA
TCCACTGATTTACAATGTGGAAAAAGAGTTACTTGCCGAACACCTAACGT
CAATATTGCAGAAGGGCTTGGATTCATTGTTGGAAGACAACAGACTGAGT
GACCTTACACTGTTGTACGGGCTGCTTAGTCGAGTCAAAAATGGAACATC
CGAGCTGTGCGGCAATTTCAACGGTTTCATTAAGAAAAAGGGACGCACCA
TTGTCATCGATCCCGAGAAGGATAAGAGCATGGTCCAAGATTTGCTCGAT
TTCAAGGACAAAATGGATGTGATAGTTCGCACCTGCTTTGAGCACAATGA
GAAATTCACAAACTCGTTGCGCGAGGCCTTTGAGTTCTTTATCAACCAAC
GTGCCAACAAGCCGGCCGAGCTTATTGCTAAATACGTAGATATGAAACTG
CGATCTGGCAACAAGGGAACCACAGATGAGGAGTTGGAAAAGACTCTAGA
TAAAATCATGGTTCTGTTTCGTTTTATACATGGCAAAGATGTATTTGAAG
CGTTTTACAAAAAGGACTTGGCCAAACGATTACTTGTGGGCAAATCGGCA
TCAGTGGATTCCGAAAAGAGTATGCTCTCCAAGCTTAAGCAGGAGTGCGG
TGGAGGGTTTACGTCCAAGCTGGAGGGCATGTTTAAGGACATGGAACTGA
GCCGAGATATCAACATTGCGTTCCGCGGACACGCGTTAAGCAACAACCGC
GATGTCCACAACTTGGACTTGTGCGTCAGCATTCTTACCATGGGCTACTG
GCCTACATATGCACCTACAGAGGTCACAATGCCGCCACAGTTCATCAATC
CTCAGCAGATTTTCAACAAATTTTATCTGGAAAAGCATAGTGGGCGGAAG
TTGCAGTGGCAGCCTACATTAGGAAATTGTATGCTGCGTGCTCAATTCGA
TGCGGGACCGAAAGAATTGTTGGTCTCGCTGTTTCAAGCGCTTGTGCTTC
TATTGTTTAACGATAAGCCAGTTCTGAGCTACGAGGAGATATTGGCCGCC
ACCCTCATCGAGGATGGAGAGTTGCGTCGAACACTTCAGTCCCTGGCTTG
TGGGCGCGCCCGCGTCATAACAAAAACACCGAAAGGCCGCGAAATCTTGG
ATGGCGATCAGTTTGATTTTAACAATGAGTTCACAAACAAATTGTTTAGA
ATCAAGATCAACCAAATACAGATGAAGGAGACAAATGAGGAGCAAAAGGC
GACGGAGGAGCGTGTGTTTCAGGATCGTCAGTATCAAATTGATGCGGCTA
TTGTGCGCATTATGAAAATGCGAAAAACGCTGAGCCATAATCTTCTCATC
ACCGAGCTGTTCAACCAGCTTACCTTCCCTGTCAAGCCCGCTGACCTAAA
GAAGCGAATCGAGTCGCTCATCGACCGCGACTACATGGAGCGAGACAAGG
ATAATCAAAACCAATACAACTATGTGGCATAAAAGCTTTCTAGACCAT
BS22161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul4-RB | 2466 | CG8711-PB | 1..2466 | 17..2482 | 12330 | 100 | Plus |
| Cul4-RA | 2466 | CG8711-PA | 1..2466 | 17..2482 | 12330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul4-RB | 3405 | CG8711-RB | 389..2855 | 17..2483 | 12335 | 100 | Plus |
| Cul4-RA | 3346 | CG8711-RA | 393..2859 | 17..2483 | 12335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8104691..8105152 | 1047..586 | 2310 | 100 | Minus |
| 2R | 25286936 | 2R | 8103522..8103914 | 1955..1563 | 1965 | 100 | Minus |
| 2R | 25286936 | 2R | 8105525..8105849 | 341..17 | 1625 | 100 | Minus |
| 2R | 25286936 | 2R | 8103183..8103462 | 2233..1954 | 1400 | 100 | Minus |
| 2R | 25286936 | 2R | 8105213..8105458 | 586..341 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 8104158..8104356 | 1431..1233 | 980 | 99.5 | Minus |
| 2R | 25286936 | 2R | 8104453..8104639 | 1234..1048 | 935 | 100 | Minus |
| 2R | 25286936 | 2R | 8102970..8103122 | 2386..2234 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 8103966..8104104 | 1565..1427 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 8102810..8102908 | 2483..2385 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:29:29 has no hits.
BS22161.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:20 Download gff for
BS22161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-4-RB | 389..2852 | 17..2480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:51 Download gff for
BS22161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-4-RA | 393..2856 | 17..2480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:06 Download gff for
BS22161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul4-RA | 393..2856 | 17..2480 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:06 Download gff for
BS22161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8102813..8102906 | 2387..2480 | 100 | <- | Minus |
| 2R | 8102970..8103122 | 2234..2386 | 100 | <- | Minus |
| 2R | 8103183..8103461 | 1955..2233 | 100 | <- | Minus |
| 2R | 8105213..8105457 | 342..586 | 100 | <- | Minus |
| 2R | 8105525..8105849 | 17..341 | 100 | | Minus |
| 2R | 8103523..8103912 | 1565..1954 | 100 | <- | Minus |
| 2R | 8103967..8104103 | 1428..1564 | 100 | <- | Minus |
| 2R | 8104162..8104354 | 1235..1427 | 100 | <- | Minus |
| 2R | 8104453..8104639 | 1048..1234 | 100 | <- | Minus |
| 2R | 8104691..8105151 | 587..1047 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:51 Download gff for
BS22161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3991667..3991859 | 1235..1427 | 100 | <- | Minus |
| arm_2R | 3991958..3992144 | 1048..1234 | 100 | <- | Minus |
| arm_2R | 3990318..3990411 | 2387..2480 | 100 | <- | Minus |
| arm_2R | 3990475..3990627 | 2234..2386 | 100 | <- | Minus |
| arm_2R | 3990688..3990966 | 1955..2233 | 100 | <- | Minus |
| arm_2R | 3991028..3991417 | 1565..1954 | 100 | <- | Minus |
| arm_2R | 3991472..3991608 | 1428..1564 | 100 | <- | Minus |
| arm_2R | 3992196..3992656 | 587..1047 | 100 | <- | Minus |
| arm_2R | 3992718..3992962 | 342..586 | 100 | <- | Minus |
| arm_2R | 3993030..3993354 | 17..341 | 100 | | Minus |
BS22161.pep Sequence
Translation from 16 to 2481
> BS22161.pep
MSAAKKYKPMDTTELHENTENIAACLKKAENVAPTAAAASSVGRSAFAAQ
NMNSASTNGERLPNFSKLGGSHGEIRTASTTSNLLNRMGAIHNSKPGDVK
KIVIKNFKDKPTLPDNYSKDTYVKLEEAVIAIQLSKPIKYSLEELYQAVV
NMCSHKMDAQLYAKLKELTEQHVKRNIKLKELTGGSMDKLILLEKINHWW
LSFCQQMIMIRSIFLYMDRTYVLQNSTVHSIWDMGLDLFRIHFAQNSVVQ
KRTVDGLLTLIEKERQGSTVDRGLLKSLVRMLCDLQIYTSSFEEKFLDAT
NQLYKAESQRKMQELEVPEYLQHVNKRLAEENERLRHYLDSSTKHPLIYN
VEKELLAEHLTSILQKGLDSLLEDNRLSDLTLLYGLLSRVKNGTSELCGN
FNGFIKKKGRTIVIDPEKDKSMVQDLLDFKDKMDVIVRTCFEHNEKFTNS
LREAFEFFINQRANKPAELIAKYVDMKLRSGNKGTTDEELEKTLDKIMVL
FRFIHGKDVFEAFYKKDLAKRLLVGKSASVDSEKSMLSKLKQECGGGFTS
KLEGMFKDMELSRDINIAFRGHALSNNRDVHNLDLCVSILTMGYWPTYAP
TEVTMPPQFINPQQIFNKFYLEKHSGRKLQWQPTLGNCMLRAQFDAGPKE
LLVSLFQALVLLLFNDKPVLSYEEILAATLIEDGELRRTLQSLACGRARV
ITKTPKGREILDGDQFDFNNEFTNKLFRIKINQIQMKETNEEQKATEERV
FQDRQYQIDAAIVRIMKMRKTLSHNLLITELFNQLTFPVKPADLKKRIES
LIDRDYMERDKDNQNQYNYVA*
BS22161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul4-PB | 821 | CG8711-PB | 1..821 | 1..821 | 4205 | 100 | Plus |
| Cul4-PA | 821 | CG8711-PA | 1..821 | 1..821 | 4205 | 100 | Plus |
| Cul3-PE | 773 | CG11861-PB | 22..773 | 112..821 | 1159 | 37 | Plus |
| Cul3-PC | 773 | CG11861-PA | 22..773 | 112..821 | 1159 | 37 | Plus |
| Cul3-PD | 773 | CG11861-PC | 22..773 | 112..821 | 1159 | 37 | Plus |
