BS22163.complete Sequence
1820 bp assembled on 2011-02-14
GenBank Submission: KX805814
> BS22163.complete
GAAGTTATCAGTCGACATGGCTAACCGCGATGTATTCTCAAAGATCCTGC
CAAATGTCAAGTTGGGCACCCGCTACGACGAGGATGGGCGTGAAGTTCAG
GTGGAGCGTCGCGAGGACTCGGATGCCACGGCCAAGGAGCAGGACACCTT
CGACATACTGGTGGCAGCCGGATATTATCGTGCCCGCATCAAGGGCTTAT
CCGCATTCGATAAGGTTGTGGGCGGTATGACTTGGTGCATCGAATGCTGC
GACTACGATGTGGACGTGGACCTTCTGTTCCATGAGAGTCTGTCCATTGG
ACAGAAGATTGCCTTGGTGGAGAAGATCGTAGCCGTCCTGATTGACATGA
AGTGCCCACACAGCCTGGAACCCCATCAAGTGCAGGGTCTGGAATTCTTG
GCCATACATCCCGTCATCCAGTGGCTAGTTAAGACCTCTGTGGAAAACCG
AGCGGAGCGTGGGCAGCGCTTGAAGAGATTTGCCATCGGCCAGTTTCATA
ATCACTATCAGTACAAAAGCGACAAGGACAATCTCACTAAAATACGCCTG
GCCTCCACAAACATTAAGGCTATACAGGATCTGTACGGCCCCAGGAGGCA
GTACGAACGCCAAGAAGCTCCTGATGATGATGATGATGTGTCCAGGGTGC
GTCTTACTCTTTTAGAATACGGAGATCCAGGACCGACCTTTAGGAGCAGC
GCTGAAAGAAAGGCGGATCGGGGTCCTGGAGAAAAAGATGAGCTCGATCT
GGAGGAGTATCTTCGCAGCTTATCTCTCATCAAAGATGACCCGACGGGCA
CTCAAAAGCGCATTGATCTCGATCCTACAGCACGGCAAGAGCTTCAACAG
CACTATGCTGAATTCAAGCTGGAAATGGAGACGGATGCCCAAGAGTTGAA
ATCACAAAACCAACAAAAACGTCTCGAGGCGGCCAAAATTGCTATGGAAC
ATAAGATTAGACGTTACTGCAAGGAAAACGAACAGCTGCAAGATGCTGAA
AATGAGCAGAAAGAAAAGACCAAGGAAGTGGAGGACCAATTGAATACCTT
AAATACTGAGCTCAAAGCACACAAAGATACACAGGATAAAGCAGATCCAA
AGCTCCTCGAAAAAATACAGAGTTTGCTGCAACAACATGAAGAGCTGAAG
AAAAGCGAGGCGGAATTCAAGGAATCTTGTCGCACCGATTTGGCCAATCT
ACAGCTGCAAATCGATGACCTGGAATCATTTAGTGCCCAAGACGCGGAAG
CACAAGCCGCAGCATTGGCCGGTGAGGAGCAACGTCTGAAGGAGCTGCGC
CTGCAGTTGGCCAAGAGAAATCGCGGAATTGTGGCCATCGAACGAAAACT
TGATGCCATTCCTGATCGCACAGAGCTGGCCCAATACCAGAGACGTTTCC
ACGAACTGCACAACGAGATGAGCGGCAAGCATCTGGAAACCAAGCAATAT
TACACCCTGTACAACACACTCAACGACAAAAAGCGCTACATGGAAAAGGA
ACTGGCCCTACTTAACTCCATCTGCGAAGCGTACAACGAGGGTATGATGA
GTCCGCACGGCCGCGAGGACTTTATCCGCCAGTTTGAGTCCATCGTGGAC
GGCGTTAAGAGTGCCCAGGACAAGGTGCGTCACAAGTACAACGAGGAGCG
GATGCGTCGCGACGAGCTGAACGAGGAGCTGCAATCGCTGCTGGAACTGC
AGCGCCAGTATGCTCTGGCTGTCAAGCAGCTAACCCGCGAGTGCCAGCGC
TGCGAGCAGCTGCAACTGCAGCTCAGGTCAATTAGGGGCAGGACCCAGTC
CTAGAAGCTTTCTAGACCAT
BS22163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fidipidine-RA | 1788 | CG7773-PA | 1..1788 | 17..1804 | 8940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fidipidine-RA | 1977 | CG7773-RA | 119..1907 | 16..1804 | 8945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16262354..16262942 | 1804..1216 | 2945 | 100 | Minus |
| 2R | 25286936 | 2R | 16263177..16263538 | 1102..741 | 1810 | 100 | Minus |
| 2R | 25286936 | 2R | 16263603..16263905 | 742..440 | 1515 | 100 | Minus |
| 2R | 25286936 | 2R | 16264153..16264364 | 309..98 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 16263959..16264091 | 442..310 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 16263008..16263121 | 1215..1102 | 570 | 100 | Minus |
| 2R | 25286936 | 2R | 16264414..16264501 | 103..16 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:37:38 has no hits.
BS22163.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 18:28:31 Download gff for
BS22163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fidipidine-RA | 122..1909 | 17..1804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:22 Download gff for
BS22163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fidipidine-RA | 120..1907 | 17..1804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:06 Download gff for
BS22163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fidipidine-RA | 120..1907 | 17..1804 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:06 Download gff for
BS22163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16262354..16262942 | 1216..1804 | 100 | <- | Minus |
| 2R | 16263008..16263121 | 1102..1215 | 100 | <- | Minus |
| 2R | 16263178..16263536 | 743..1101 | 100 | <- | Minus |
| 2R | 16263603..16263905 | 440..742 | 100 | <- | Minus |
| 2R | 16263962..16264091 | 310..439 | 100 | <- | Minus |
| 2R | 16264153..16264361 | 101..309 | 100 | <- | Minus |
| 2R | 16264417..16264500 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:22 Download gff for
BS22163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12150683..12151041 | 743..1101 | 100 | <- | Minus |
| arm_2R | 12149859..12150447 | 1216..1804 | 100 | <- | Minus |
| arm_2R | 12150513..12150626 | 1102..1215 | 100 | <- | Minus |
| arm_2R | 12151658..12151866 | 101..309 | 100 | <- | Minus |
| arm_2R | 12151108..12151410 | 440..742 | 100 | <- | Minus |
| arm_2R | 12151467..12151596 | 310..439 | 100 | <- | Minus |
| arm_2R | 12151922..12152005 | 17..100 | 100 | | Minus |
BS22163.pep Sequence
Translation from 16 to 1803
> BS22163.pep
MANRDVFSKILPNVKLGTRYDEDGREVQVERREDSDATAKEQDTFDILVA
AGYYRARIKGLSAFDKVVGGMTWCIECCDYDVDVDLLFHESLSIGQKIAL
VEKIVAVLIDMKCPHSLEPHQVQGLEFLAIHPVIQWLVKTSVENRAERGQ
RLKRFAIGQFHNHYQYKSDKDNLTKIRLASTNIKAIQDLYGPRRQYERQE
APDDDDDVSRVRLTLLEYGDPGPTFRSSAERKADRGPGEKDELDLEEYLR
SLSLIKDDPTGTQKRIDLDPTARQELQQHYAEFKLEMETDAQELKSQNQQ
KRLEAAKIAMEHKIRRYCKENEQLQDAENEQKEKTKEVEDQLNTLNTELK
AHKDTQDKADPKLLEKIQSLLQQHEELKKSEAEFKESCRTDLANLQLQID
DLESFSAQDAEAQAAALAGEEQRLKELRLQLAKRNRGIVAIERKLDAIPD
RTELAQYQRRFHELHNEMSGKHLETKQYYTLYNTLNDKKRYMEKELALLN
SICEAYNEGMMSPHGREDFIRQFESIVDGVKSAQDKVRHKYNEERMRRDE
LNEELQSLLELQRQYALAVKQLTRECQRCEQLQLQLRSIRGRTQS*
BS22163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fidipidine-PA | 595 | CG7773-PA | 1..595 | 1..595 | 3049 | 100 | Plus |
| rgn-PD | 800 | CG6014-PD | 349..657 | 226..585 | 171 | 24.5 | Plus |
| rgn-PA | 800 | CG6014-PA | 349..657 | 226..585 | 171 | 24.5 | Plus |
| rgn-PC | 808 | CG6014-PC | 357..665 | 226..585 | 171 | 24.5 | Plus |
| rgn-PB | 808 | CG6014-PB | 357..665 | 226..585 | 171 | 24.5 | Plus |
