BS22165.complete Sequence
1745 bp assembled on 2011-02-17
GenBank Submission: KX804141
> BS22165.complete
GAAGTTATCAGTCGACATGGACTTTCCGGACAAAATGGATTTGGAGAACG
AGAGGGTACTGAAGCTGATATTCCCCGACGGTGTGCCAGACAATCTGCGT
GGCAATCCGGAGCTGGATAACTACCTCGCCAAACTGGGTACCTGCAAGGT
GGAGCAGCTGAAGAAGGAGCAGACGCGACTGGCGGAAGAGGCGCGCACCA
TTCTGGAGCAGACACAGGATCTGGCCATCTCCAACTACAGAACTTTCATC
ACCACCGCGGAGAACTCGCGTTCGATTTTCAGCGAGTTCCTGCGATCGGA
GCAGCAGCTGGACACACTGGTGTCCAAGCTTCCCGACCTCAGTGTCCAGT
GCGAACGCTTCCTGCAGGACTCCGCCGAGCTGAATGAGCAACGGCGACTG
AATTCCATTACCCTGCAAAAGAACGCCCAGTTGCTGGAAGTTCTCGAACT
GCCGCAACTCATGGAGCGCTGTATTCGCGAGGGCCGCTACGAGGAGGCTC
TGGAACTGGCCGCCTACGCCACCCGCTTGGGCCAGCACCAGGGACACATT
CCCGTGGTCACAAGCATTGTGCGCTCCGTGGAAGCCCTGTGGCACAACAT
GCTGGTGCAGCTGGTTGCACAACTGCGGACGGATCTCCAGCTACCCAAGT
GCCTGCAAATCGTGGGCTATCTTCGACGGATGCAGGCATTCGGTGACAAC
GAACTGCGATTGAAGTTTCTGCAGGCAAGGGACGCGTGGTTAACTTCTTG
CCTGGAGGCCATACCCACTGCAGATGCCCAGCAGCATCTATCGAAAACCA
TCGAGATTACTCGCATAAATCTGTTCAATATAATCACCCAGTATCGCGCA
ATTTTCCCGGAAGACGAGGGCACTCTAAAGACTCAGAGTTCTTTAAGACC
GCTGCAGGGCGTCAGCTGCAACGGTGACAGACTTTTTCAGGCCTGGCTGC
ACAATAAGATCAGCGACTTTCTGCAGACTCTGGAACGTGATCTACAGCTA
GGAGTTGGCTCCGTCGAAACAGTGCTTGGGCAGTGCATGTACTTTGGGCT
GTCGTTTAGCCGTGTCGGCGCTGATTTTCGTGCCCTTATGGCTCCAATTT
TCGTGGGCGTGATCCGCCGTCGCTTTGAGAGCAGCGTGGAACAGGTCGAC
GAGCAGTTCGAGCGGGAACTGGAGAGATTCACCTTGATCAACAAGGTGGC
GCTGCACTCTCACGCCCGCAAGCAGGTTGATCCCGAGCAGGAGTCCTACG
CGCCGCCCGAAGCTCTATTGGATTTCTATCCCCTGGCCGCTTTGTGCAAT
GGCTATCTGAGCGCGTTGAACGAGCTGCGTCTGTGTGCTCCCTTGGCCTT
GGCCACCGATGTTACCCGCTGTCTGCAGCACTCCCTGCAACAGGCTGCTC
AGCGTGTGCTTGCCTTTTATCGGCAAGAGCAGCAGGCCTTCGCCGGCAGC
GAACGAGAGGCATTTGTTCGGCTCTGCTCATGTCTGGCCTACGACCTGGT
ACCCTATATTCAGAGGTGCATCCATGGAGTCTTCCCCCCGCAGTCGCTAA
CCGTTCACTTGGGCATTAGCTTGCTTCAGCTGGAGCAACAGCAGCTCACC
TACTTGCAGCAGACTCGCATTCTTGAGCCCTTGAAGCACTTACTGCCGAC
CAAGGCACTGGTGCAGCCCCAGGATAAAGTGATGGAGGCTAAGCCAAGCG
CTGGGGTGCCTGTCACTGCCGAGGGATAAAAGCTTTCTAGACCAT
BS22165.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6488-RA | 1713 | CG6488-PA | 1..1713 | 17..1729 | 8565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6488-RA | 1876 | CG6488-RA | 67..1780 | 17..1730 | 8570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11496900..11497673 | 1730..957 | 3870 | 100 | Minus |
| 2L | 23513712 | 2L | 11498267..11498742 | 562..87 | 2380 | 100 | Minus |
| 2L | 23513712 | 2L | 11497995..11498208 | 776..563 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 11497730..11497912 | 958..776 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 11498810..11498882 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:47:20 has no hits.
BS22165.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 13:21:29 Download gff for
BS22165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6488-RA | 238..1948 | 17..1727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:58 Download gff for
BS22165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6488-RA | 67..1777 | 17..1727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:37 Download gff for
BS22165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6488-RA | 67..1777 | 17..1727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:37 Download gff for
BS22165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11496903..11497671 | 959..1727 | 100 | <- | Minus |
| 2L | 11497730..11497911 | 777..958 | 100 | <- | Minus |
| 2L | 11497995..11498208 | 563..776 | 100 | <- | Minus |
| 2L | 11498267..11498739 | 90..562 | 100 | <- | Minus |
| 2L | 11498810..11498882 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:58 Download gff for
BS22165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11496903..11497671 | 959..1727 | 100 | <- | Minus |
| arm_2L | 11497730..11497911 | 777..958 | 100 | <- | Minus |
| arm_2L | 11497995..11498208 | 563..776 | 100 | <- | Minus |
| arm_2L | 11498267..11498739 | 90..562 | 100 | <- | Minus |
| arm_2L | 11498810..11498882 | 17..89 | 100 | | Minus |
BS22165.pep Sequence
Translation from 16 to 1728
> BS22165.pep
MDFPDKMDLENERVLKLIFPDGVPDNLRGNPELDNYLAKLGTCKVEQLKK
EQTRLAEEARTILEQTQDLAISNYRTFITTAENSRSIFSEFLRSEQQLDT
LVSKLPDLSVQCERFLQDSAELNEQRRLNSITLQKNAQLLEVLELPQLME
RCIREGRYEEALELAAYATRLGQHQGHIPVVTSIVRSVEALWHNMLVQLV
AQLRTDLQLPKCLQIVGYLRRMQAFGDNELRLKFLQARDAWLTSCLEAIP
TADAQQHLSKTIEITRINLFNIITQYRAIFPEDEGTLKTQSSLRPLQGVS
CNGDRLFQAWLHNKISDFLQTLERDLQLGVGSVETVLGQCMYFGLSFSRV
GADFRALMAPIFVGVIRRRFESSVEQVDEQFERELERFTLINKVALHSHA
RKQVDPEQESYAPPEALLDFYPLAALCNGYLSALNELRLCAPLALATDVT
RCLQHSLQQAAQRVLAFYRQEQQAFAGSEREAFVRLCSCLAYDLVPYIQR
CIHGVFPPQSLTVHLGISLLQLEQQQLTYLQQTRILEPLKHLLPTKALVQ
PQDKVMEAKPSAGVPVTAEG*
BS22165.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6488-PA | 570 | CG6488-PA | 1..570 | 1..570 | 2900 | 100 | Plus |
