BS22173.complete Sequence
1958 bp assembled on 2011-02-17
GenBank Submission: KX802148
> BS22173.complete
GAAGTTATCAGTCGACATGATGTCGCCGCATAAGACCCACACCTGGCTGC
CACTGGCGGTGGCCGCCCTCCTGCTGATCCTTGGACCGCAGTCCTCCCTG
GCGGAGGAACCCATTTATCGCCTGTGTGTGCCGCAAATCTATTTGGCCGA
GTGCCAGCAGCTGCTGGCCGATCCCTCGGAGGCGGGCATCCGCATGGAGT
GCGTGGCTGGACGGGATCGAGTGGACTGCCTGGAGCTGATCGAGCAGCGC
AAGGCCGATGTGCTGGCCACCGAGCCGGAGGACATGTACATCGCCTATCA
TCGCAAGAACGAGGACTATCGCGTGATCTCTGAGATCCGAACGCAGCAGG
ACAAGGATGCCGCCTTCCGTTACGAGGGCATTATCCTGGTGAAGAAGGAC
TCCCCCATTCGCACCCTGCAGCAGCTGCGTGGCGCCAAGTCCTGCCACAC
TGGCTTCGGCCGCAACGTCGGCTACAAGATCCCCATCACCAAGCTGAAGA
ACACGCACGTCCTGAAGGTGTCCGCCGATCCGCAGATCTCCGCTACGGAG
CGCGAACTGAAGTCGCTGTCCGAGTTCTTCACGCAGTCGTGCCTGGTGGG
CACCTACTCCACGCATCCGGAAACGGATCGCCTGCTGAAGAAGAAGTACG
CCAATCTGTGCGCTCTGTGCGAGAAGCCGGAGCAGTGCAACTATCCGGAC
AAGTTCAGTGGCTATGATGGCGCCATACGCTGCCTGGACAAGGGTCAGGG
CGAGGTGGCCTTCTCCAAGGTGCAGTACATCAAAAAGTACTTTGGTCTGC
CGGGTGCCGGCCCAGATGCGCCGCCAGCGGAGGGCAATCCGGAGAATTTC
GAATATCTGTGCGAGGATGGCACCCGGCGCCCGGTCACCGGACCCGCCTG
CTCCTGGGCCCAGCGCCCCTGGAGCGGCTACATCTCCAACGAGCAGGCCG
TTCACAACTCGGAGCAGCTGCACCAATTGCAGTCGCGTCTGGAGCGCTTC
TTCGCCAATGGACTGCAGGCGCAGAACAAGGACGCCGCCGCCCATCTGCT
CATCCAGCCGAATGCCGTGTACCACAGCAAGGATGCTGCCATCGATCCCA
AGGTCTATTTGGAGCGTGCCGGCTACAAGGATGTGATCGAGCGTGATGGC
AGTGCCATCAGGAAGATCCGCTTGTGCGCCCAGAACGACGACGAGTTCGC
CAAATGCCAGGCGCTGCACCAGGCTGCCTACGCCCGCGACGCTCGTCCGG
AACTCGAGTGCGTTCAGTCCACCGATTGTGTGGTGGCTCTGACCAAGAAG
GAGGCGGATTTGACCATTGTTCGCGCAACTGGCTACGCGGATGCCCGTAG
CAACCAGCTGCAGCCAATCGTCTACGAGCAGAGGGCTCAGGATGATGTCC
TTGTGGCGGTCGCAGCACCCGGCGTTACACGGGAGGCTCTCCAGAAGGCC
AGCATCAAATTCAATGAGAATTGCGAACGATCCCGTGCTGCTGCCGCCTT
GTTGAACAAGCGACGTGGCCTGGACGCTTGTCGTGTCTCATCCAGCGACG
ATGGAGAGGTGCAGATCGTGCCCGCCTCCGAGCTGGAGAAGCACAAGGAC
GCGCAGCTGGTGTGCCCCAGTCTGGAGCGGCGACCGGTCACCGACTTCCG
TGACTGCAACGTGGACGTACAGCTGCCCCGTGCCATCTTCATCCGATCGG
ACACCACCAGCGTGGAGCAGGAGACAGTGAAGCATCTGTTCTCGCTGATC
TCGGACAAGTTTGGTGCCCGCGGCAAGCTGGTGGATGTTTTCGCTCTGTT
CGGCGAATTCCAGAAGGGCAAGAAGAATGTGTATTTCAACGACAAAGCCG
TTCAGCTCACCACGGAGCTCAAAAACGAAATCCAGAACGAGCAGATCTAC
ACAGATCTCCAGTGCAATGCTAACAAGATTGCCAAGCAGTGAAAGCTTTC
TAGACCAT
BS22173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf1-RC | 1926 | CG6186-PC | 1..1926 | 17..1942 | 9630 | 100 | Plus |
| Tsf1-RA | 1926 | CG6186-PA | 1..1926 | 17..1942 | 9630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf1-RC | 2854 | CG6186-RC | 866..2791 | 17..1942 | 9630 | 100 | Plus |
| Tsf1-RA | 2017 | CG6186-RA | 29..1954 | 17..1942 | 9630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18388573..18389669 | 359..1455 | 5485 | 100 | Plus |
| X | 23542271 | X | 18389728..18390117 | 1452..1841 | 1935 | 99.7 | Plus |
| X | 23542271 | X | 18388124..18388366 | 117..359 | 1215 | 100 | Plus |
| X | 23542271 | X | 18390180..18390281 | 1841..1942 | 510 | 100 | Plus |
| X | 23542271 | X | 18387949..18388048 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:34:11 has no hits.
BS22173.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:21 Download gff for
BS22173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf1-RA | 18..1942 | 17..1941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:25 Download gff for
BS22173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf1-RA | 29..1953 | 17..1941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:12 Download gff for
BS22173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf1-RA | 29..1953 | 17..1941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:12 Download gff for
BS22173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18387949..18388048 | 17..116 | 100 | -> | Plus |
| X | 18388124..18388366 | 117..359 | 100 | -> | Plus |
| X | 18388574..18389669 | 360..1455 | 100 | -> | Plus |
| X | 18389732..18390116 | 1456..1840 | 100 | -> | Plus |
| X | 18390180..18390280 | 1841..1941 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:25 Download gff for
BS22173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18281982..18282081 | 17..116 | 100 | -> | Plus |
| arm_X | 18282157..18282399 | 117..359 | 100 | -> | Plus |
| arm_X | 18282607..18283702 | 360..1455 | 100 | -> | Plus |
| arm_X | 18283765..18284149 | 1456..1840 | 100 | -> | Plus |
| arm_X | 18284213..18284313 | 1841..1941 | 100 | | Plus |
BS22173.pep Sequence
Translation from 16 to 1941
> BS22173.pep
MMSPHKTHTWLPLAVAALLLILGPQSSLAEEPIYRLCVPQIYLAECQQLL
ADPSEAGIRMECVAGRDRVDCLELIEQRKADVLATEPEDMYIAYHRKNED
YRVISEIRTQQDKDAAFRYEGIILVKKDSPIRTLQQLRGAKSCHTGFGRN
VGYKIPITKLKNTHVLKVSADPQISATERELKSLSEFFTQSCLVGTYSTH
PETDRLLKKKYANLCALCEKPEQCNYPDKFSGYDGAIRCLDKGQGEVAFS
KVQYIKKYFGLPGAGPDAPPAEGNPENFEYLCEDGTRRPVTGPACSWAQR
PWSGYISNEQAVHNSEQLHQLQSRLERFFANGLQAQNKDAAAHLLIQPNA
VYHSKDAAIDPKVYLERAGYKDVIERDGSAIRKIRLCAQNDDEFAKCQAL
HQAAYARDARPELECVQSTDCVVALTKKEADLTIVRATGYADARSNQLQP
IVYEQRAQDDVLVAVAAPGVTREALQKASIKFNENCERSRAAAALLNKRR
GLDACRVSSSDDGEVQIVPASELEKHKDAQLVCPSLERRPVTDFRDCNVD
VQLPRAIFIRSDTTSVEQETVKHLFSLISDKFGARGKLVDVFALFGEFQK
GKKNVYFNDKAVQLTTELKNEIQNEQIYTDLQCNANKIAKQ*
BS22173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf1-PC | 641 | CG6186-PC | 1..641 | 1..641 | 3336 | 100 | Plus |
| Tsf1-PA | 641 | CG6186-PA | 1..641 | 1..641 | 3336 | 100 | Plus |
| Tsf3-PA | 714 | CG3666-PA | 54..444 | 55..454 | 450 | 28.1 | Plus |
| Tsf2-PA | 819 | CG10620-PA | 62..325 | 55..332 | 196 | 22 | Plus |
| Tsf2-PA | 819 | CG10620-PA | 481..695 | 62..290 | 195 | 25.7 | Plus |
