BS22179.complete Sequence
2750 bp assembled on 2011-02-17
GenBank Submission: KX802307
> BS22179.complete
GAAGTTATCAGTCGACATGTGGAAAACGTTGTGTTTGCTGCTTCTCTTGA
CGGCCACCTGCAGCGCAGGACCCCTGTCCGCCCACCAGAAGAGGAAAGCA
CCCGTGACGCGTGAGGAGCCTGTCCCAGCTGAGGTGGAAATGCCGGAACA
GACCGAAACGGAGGATGAGGAGGCTCCAGCGGAAGCAGCTTCCATGGGAA
CGCTCACCCTGCCCAGCAATGCCACCTCCATTCGCTCGGACATCACGGAT
AACTTCTCGTGTGTCAACAAGACCTATGGCTACTATGCCGATGTGGAGAA
CGACTGCCAGATCTTTCACGTGTGCCTGCCGGTTACCTACGCCGATGGCA
GGGAAAATACTTTCCGCTGGAGCTTCATCTGCCCCGAGGAGACCATCTTC
AGTCAGGAATCGTTCACCTGCATGCGTCGCGAGGACATGACCATCGAGTG
CGAGGATAGCTCCAGATACTACGAACTGAATGGCAACTTTGGTGGTCCTG
CGGAGGAGGAAAGTAAGCCCACTCCCGTGGAGAGCGAGGAGCCGGAGAAG
GAGGAGTCAGAGCCCGAACCCGAACCCGTTGAGTCAGAGCCAGAGATTCC
GGCAGAACCAGAAGTCCAGACAGCCAAGCCGATGAAGCCAGTCAAGGCCC
AAAAGCCCAAACCCAACCGAAGGAAGCCCCAGCCCCAGAGAAAGGTTCCA
GCTGTAGTTACTGCTGCACCTGAGGTAGAAGCTATTCCCGAGCCAAGTGC
CCCCGTCGAAATGGAGCCGAAGCCCTTGAAGCCACAGAGGTTCACCAGCA
GACCCCACCAGGAAAGACCCCAAGTGAAGAGGCCTGCAATTGCTGCTCCA
CCTATGCGAAATGAGCTATTCAATGGAATCCGCAAGCGTCCAGCCATCTT
CAATAAGCCACCAACTACAGTGAAACCAGTTGAGGAGGTGGTGGAAAATG
AACCGGCGGTCACAGAGGCAGTGGTTCAACTTAGTGAGCCCCAACCCACA
CTGAAACTGCAGACCTTGTTCGCGGAACCGGAAGTTATTCCTGTGGAAGT
CCAGGAGCCAGAAGTTCAGGCTTCCGAACCAGCTGTGACTTTCGTTCAGC
CAGAGCCCGTTGTTGAGGAAGTGGTACCCTCGAAGGTGGAGATTGATACC
AGGATCGAGGATGTCAAGCCCATTGAAGCCATCGAAGAGATTCCTGCCGT
CATAGTGGAAAGTCTGGATCAATCAAGGCCCCAGGAAATGCAGGAGGAAG
CTAAGATAACTGAAGAGGAGGCCAAACCAGAGGAGGAGCCAAAGCCGGAA
GAAGAAGTGAAACTCGAAGAAGAACTGAAGTCAGAAGAAGCAGCTAAGCC
GGAGGTGGAGCTGAAACCCCAGGAAATTCAAGCCCAAGAAGAGCCCGAAG
TGCCAGCCAAGGTGGAGGAGATCATTGAAGCTAATCCCGAGGAAATTAAA
TCGGAGCCAGCTATTATGGAGGTCAGCAACTCCCATGAGGAACCCTTGGT
CAACCTGGAAGCTCTGGAAGCGGCCAAGCCAGCAGATGCGCCCGAGAGCA
TGCCAGCCACTCCTGAAATGGAACAGCACAGTCCTCTTGTGGAAGAAATC
CTGGATAACACTAACGATGGAGAGGCGCAGGAGTCCCTGGGAGGCTTCAA
GCCAGTGGATCCCGTGATGGCCGCCGAAGCGGAACAGTTGATCACCGACT
TTCTTAACACCCTCAAAAAGAACGAAGAGAAACCAGAGACTGACTTGGCT
GAGAGTATACTGCCAGTAAATAATACCGATGTGTCCATTGAGGAGGCCAA
GCTTCCGGAGCCCGAGATCGTGGACAAGAATGCATCAGTTGAGGAGCAGT
TGTTGGAGGAAACCGAAGACAAGAAGTCTCACAAGACCGAGATGATGCAG
GACTCTCCGATCATCAATATAATGCAGGTGCAACATATGCCCATGGACTA
CAGAATCCCAGTCCGGGTTATTCCCGTGGAAGTCCAACCTGTTCCCGCAA
TCTCTGAGGCATCAGAGGTCGCTAAGGAAAGCGCTCCAGAGGTGGTATCC
GAATCTTCTCTAGAGGAGGCCAAGGAAAGTGCTGCAGAAGAAGCTAAAGA
ATCCATTCCCGAAGAAGTTGTCGATACAGCTCCTGAGGAAGTCAAACAAA
TTCCTAATGTAGAGATTCAGGAATCCCCTATGGAGGAGCCTAAAGAATCT
TCTCCTGAAGAAATCAAGGAAAGCACTCCCGAGGAAATCAAAGAGACTGC
TCCAGAGACAGAGGTTGAGCTGGTGGTCGCGCCCGACCAGACTGCTTTCC
ACGACGATGACGCCCAGGAGAGTCTAGTCACAGCCGCCTACATGCCCTCC
ATCGAGGACATCGTGGAACTGGTCAAAGAGCGCCTGGATCAGACGCCCAA
GAAGGATCAGATGGCTCCCATGGAGCTGATACTCACACCTGGTGGTGCAG
AACCCATGTCCTTGGTTCAGAGCACTCCAGAACAGTTGGAGCCGGAATCT
CAGCCCACGGAGGAGGCGGCATCCACTGCCGGGCAGGAAGAGGAAGTCAT
CCTGCCCATTTACAAACGCGTCTCAACTGCCGAACCCGCCATGTCTAAGG
TGCAAACGCTGCCCGTAACGGTGAGCAAAGTGGATACAGAAGCGCTGCCG
GAAACTGAATCCCAACCGGAAGTCCGGGAGCCCAAGATGGACGCCCGCAA
GCGACGTTTCCTGTTCCGCGCCGATGCCAGCTAAAAGCTTTCTAGACCAT
BS22179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12009-RA | 2718 | CG12009-PA | 1..2718 | 17..2734 | 13590 | 100 | Plus |
| CG12009-RB | 2595 | CG12009-PB | 1..2595 | 140..2734 | 12975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12009-RA | 3274 | CG12009-RA | 259..2978 | 17..2736 | 13600 | 100 | Plus |
| CG12009-RB | 3235 | CG12009-RB | 292..2939 | 89..2736 | 13240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3296372..3298704 | 404..2736 | 11665 | 100 | Plus |
| 3L | 28110227 | 3L | 3295995..3296316 | 86..407 | 1610 | 100 | Plus |
| 3L | 28110227 | 3L | 3295006..3295077 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:47:57 has no hits.
BS22179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 13:21:31 Download gff for
BS22179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12009-RA | 255..2970 | 17..2732 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:05 Download gff for
BS22179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12009-RA | 259..2974 | 17..2732 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:54 Download gff for
BS22179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12009-RA | 259..2974 | 17..2732 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:54 Download gff for
BS22179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3295006..3295077 | 17..88 | 100 | -> | Plus |
| 3L | 3295998..3296315 | 89..406 | 100 | -> | Plus |
| 3L | 3296375..3298700 | 407..2732 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:05 Download gff for
BS22179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3295006..3295077 | 17..88 | 100 | -> | Plus |
| arm_3L | 3295998..3296315 | 89..406 | 100 | -> | Plus |
| arm_3L | 3296375..3298700 | 407..2732 | 100 | | Plus |
BS22179.pep Sequence
Translation from 16 to 2733
> BS22179.pep
MWKTLCLLLLLTATCSAGPLSAHQKRKAPVTREEPVPAEVEMPEQTETED
EEAPAEAASMGTLTLPSNATSIRSDITDNFSCVNKTYGYYADVENDCQIF
HVCLPVTYADGRENTFRWSFICPEETIFSQESFTCMRREDMTIECEDSSR
YYELNGNFGGPAEEESKPTPVESEEPEKEESEPEPEPVESEPEIPAEPEV
QTAKPMKPVKAQKPKPNRRKPQPQRKVPAVVTAAPEVEAIPEPSAPVEME
PKPLKPQRFTSRPHQERPQVKRPAIAAPPMRNELFNGIRKRPAIFNKPPT
TVKPVEEVVENEPAVTEAVVQLSEPQPTLKLQTLFAEPEVIPVEVQEPEV
QASEPAVTFVQPEPVVEEVVPSKVEIDTRIEDVKPIEAIEEIPAVIVESL
DQSRPQEMQEEAKITEEEAKPEEEPKPEEEVKLEEELKSEEAAKPEVELK
PQEIQAQEEPEVPAKVEEIIEANPEEIKSEPAIMEVSNSHEEPLVNLEAL
EAAKPADAPESMPATPEMEQHSPLVEEILDNTNDGEAQESLGGFKPVDPV
MAAEAEQLITDFLNTLKKNEEKPETDLAESILPVNNTDVSIEEAKLPEPE
IVDKNASVEEQLLEETEDKKSHKTEMMQDSPIINIMQVQHMPMDYRIPVR
VIPVEVQPVPAISEASEVAKESAPEVVSESSLEEAKESAAEEAKESIPEE
VVDTAPEEVKQIPNVEIQESPMEEPKESSPEEIKESTPEEIKETAPETEV
ELVVAPDQTAFHDDDAQESLVTAAYMPSIEDIVELVKERLDQTPKKDQMA
PMELILTPGGAEPMSLVQSTPEQLEPESQPTEEAASTAGQEEEVILPIYK
RVSTAEPAMSKVQTLPVTVSKVDTEALPETESQPEVREPKMDARKRRFLF
RADAS*
BS22179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12009-PA | 905 | CG12009-PA | 1..905 | 1..905 | 4603 | 100 | Plus |
| CG12009-PB | 864 | CG12009-PB | 1..864 | 42..905 | 4389 | 100 | Plus |
| sls-PY | 10625 | CG1915-PY | 7544..8369 | 163..896 | 357 | 23.6 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 12397..13222 | 163..896 | 357 | 23.6 | Plus |
| sls-PW | 15478 | CG1915-PW | 12397..13222 | 163..896 | 357 | 23.6 | Plus |
| sls-PY | 10625 | CG1915-PY | 5355..6132 | 163..887 | 318 | 23.3 | Plus |
| sls-PY | 10625 | CG1915-PY | 5617..6333 | 165..889 | 299 | 23.7 | Plus |
| sls-PY | 10625 | CG1915-PY | 7203..7884 | 171..895 | 284 | 23.1 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 12056..12737 | 171..895 | 284 | 23.1 | Plus |
| sls-PY | 10625 | CG1915-PY | 7788..8564 | 161..890 | 283 | 21.2 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 12641..13417 | 161..890 | 283 | 21.2 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 7304..8086 | 123..885 | 278 | 22.5 | Plus |
| sls-PY | 10625 | CG1915-PY | 5689..6507 | 33..805 | 269 | 22.1 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 7801..8583 | 123..885 | 261 | 21.8 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 6736..7518 | 123..885 | 255 | 22.1 | Plus |
| sls-PY | 10625 | CG1915-PY | 8222..8838 | 167..741 | 247 | 22.6 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 13075..13691 | 167..741 | 247 | 22.6 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 6630..7376 | 159..885 | 244 | 22.2 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 6601..7163 | 339..885 | 227 | 23.9 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 11185..11983 | 160..886 | 226 | 21.9 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 11826..12571 | 160..885 | 214 | 22.1 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 8227..9009 | 123..892 | 210 | 21.2 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 6553..7086 | 363..885 | 202 | 23.3 | Plus |
| sls-PY | 10625 | CG1915-PY | 5301..5954 | 289..896 | 201 | 21.7 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 10782..11510 | 163..829 | 185 | 21.2 | Plus |
| sls-PY | 10625 | CG1915-PY | 6141..6540 | 121..485 | 182 | 22.2 | Plus |
| sls-PZ | 15155 | CG1915-PZ | 10859..11635 | 146..895 | 182 | 20.6 | Plus |
| sls-PY | 10625 | CG1915-PY | 7066..7718 | 292..885 | 173 | 21.4 | Plus |
