BS22182.complete Sequence
2411 bp assembled on 2011-02-17
GenBank Submission: KX802489
> BS22182.complete
GAAGTTATCAGTCGACATGGAAATCGCACCACTGATCAATAACGCCGTCG
CTGTCGTCACAGCCTCTGCCTCTGCCGCCGTCTCTGCCTCTGCTAGCGTC
GGCAGTAGCAGCAAGGATGATAACGTCAACAATCTAGCGTTGCTCGCGTC
GCTGACTTTACAAAAAGTGCTAAATATCAACAATAACAATAACCAGCACA
GCAAGAACAACAACCACAGCGACAATAGCAATAGCAAACAACACGAGCAA
CAAAAACAGCAGCAGCAACCACAACGACGAAACCTCGACATTAAAAGCGA
GTATGATGTACTAAACCAATTGCTAAAAACTGGAGCTGTTTTCACCGCCA
CGCCCACAGCGCCAATTGCCATCGAAAGGAGGAAGCAGACGCAGCAGCAG
CAACGTCCATATGCACAACAGGCACATCAACAGCAGCAGCAGAAGCAACG
CCTAAACTCATCCATATCATCGACCCACTCATCGACATCGACAAACTCCT
CCTACGGCAGCTCATCATCGGAGGATGCTGCAGGCACATCTGCGCCAACG
GGAGCAGGTGAAGTTGTCACATCAGCAGCATTAACACCAAGAGCAAGCAC
CACGAAGGCGTCCAGCAATAAATTGCCAGAGAAATCGAAAATTCCGTCCG
ATATACTTGATGATCTGGCCAGTCGATTTATAATCAATGTTCCGGACATG
GAGCTAAACAATCTAATACGTATGTGTTTCCAAATCGAACTGGCCCATTG
GTTCTATTTGGATTTCTTTTGTGCCCCCGAATCTGGCGAGGATGGCGAGA
CCCCGAAGTGCGTGCAACGAAAGCTGCCATCGGTGGGCATCAAGCAGTTT
GCCATGCAGTTGTTCCAACACATTCCCTTCCTGAACAAACATTTTGGCAC
CGTGGATCAAATCCTGGACGAGTGGAAGAACTACAAGCTATCGGTGCCCA
CTTATGGCGCTATTCTGGTGTCCGAGGATCACAATCACTGCTTGCTAGTG
CAGTCCTACTTCGCGCGCAACTCCTGGGGATTTCCCAAGGGCAAGATCAA
TGAGAACGAAGACCCAGCCCATTGTGCAACGAGAGAGGTTTATGAGGAGA
CCGGGTTCGATATCACGGACCTAATCGATGCCAACGACTACATCGAGGCG
TTCATCAACTACCAGTACACGCGGCTGTACGTGGTGCGAAACATACCGAT
GGACACGCAGTTCGCGCCCCGCACTCGCAACGAGATCAAGTGCTGCGACT
GGTTCCGTATCGATGCGCTGCCGGTGAACAAGAACGATGCCATATCAAAG
GCCAAGTTGGGCAAGACCTCCAACTCCTTCTTCATGATTATGCCGTTTGT
GAAGCGCCTGAAGAAGTGGGTGAACGATCGGAAGGCTGGAATCGAGCCGC
GTCGCCGCAAATTCTCTGGTCAGCAATCGCCAAAAGCGGCCTCGCCCACC
AATATGAACGGAAATTGCAAGAAGGACGTCACAGGAGTGCGAAATGAATC
GCAACGACAGAGGCACAAGTCCATGGGCGACTTGGATGGCGTCAAATTGA
ATAATCTCAATGGCAAGGGGACCGTTGGAACGGGAGCGGGATCGGCAGCT
TCCGCCTCCGCCACCGCTGCCATCAACTCGATGAACATATGCAATAGCAA
TGGGAAACGCAATAAGCAAAATGCGGCTGCGGGCAGCAATCAGGCAACGC
CAACTACAATAGCAACGCCAATGACGTCAAATGGCGCCGTCGTAGGAGGT
ACTGTATCCTCGAAGCGTCAACTGTTCCATAGCCAAAGTCAGAACGATGC
GCAGCAATCGGCAAGCAATGAGAAGCAGATTGTCAGCTCCTTCGATTTAA
TACGCAAGGAGAAGCAGCAACAACTTAAGGCAGCTAAGGCGCAAAAGCAG
CAGCAACAACAGCAGCAACGATCGCGCACCAAGTCGCAGAGTGATAAGCA
GTACAATCCACAGCAGCCAGTCAAAATCCTGGGACAACAGCAGCCCACAA
CGGGCATGGATTTGATAGCCATGCTATCGGCAGCGGCGGCAGCTCAAAAG
ACACCAAACAACGAGCAGCAAACACAAGAGAAGCAGCAGCAGCAACAACG
ACCACGACCTGCTTCAGTGTCGCTTAACCTTGGAGCAGGCAGTGCCACAG
GAGCAACAACATCAGCTCCGGATGCCCAGTACATGCACAGGCTGCAGCGC
ATGGCATCGGGCACAAATTTGAGGATTCTGAAGCGGGCACAGTCGCAGCA
GCCGCAGCAGCACCATCAGCAACAGTTGCAACTAGAACAGCAACAACAGC
AGCAGCAGCAGCTGGGAATCGACTTTACGCCAAATTTGAATTCGTGGACG
AATTTCTCCTTTACCAAGAACTTCATAGCAAATGTGTTTTGCTAAAAGCT
TTCTAGACCAT
BS22182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP2-RE | 2379 | CG6169-PE | 1..2379 | 17..2395 | 11895 | 100 | Plus |
| DCP2-RA | 2376 | CG6169-PA | 1..2376 | 17..2395 | 11815 | 99.9 | Plus |
| DCP2-RD | 1695 | CG6169-PD | 1..1695 | 698..2395 | 8410 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP2-RE | 5934 | CG6169-RE | 845..3224 | 17..2396 | 11900 | 100 | Plus |
| DCP2-RA | 3665 | CG6169-RA | 845..3221 | 17..2396 | 11820 | 99.9 | Plus |
| DCP2-RB | 2850 | CG6169-RB | 137..2406 | 124..2396 | 11285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15823247..15823990 | 868..125 | 3720 | 100 | Minus |
| 3L | 28110227 | 3L | 15822071..15822810 | 1825..1086 | 3700 | 100 | Minus |
| 3L | 28110227 | 3L | 15821444..15822016 | 2396..1824 | 2865 | 100 | Minus |
| 3L | 28110227 | 3L | 15822962..15823185 | 1088..865 | 1105 | 99.6 | Minus |
| 3L | 28110227 | 3L | 15825471..15825579 | 125..17 | 545 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 11:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2701 | 1893..2335 | 326 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2532 | 1879..2112 | 271 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2413..2886 | 1857..2323 | 251 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7035 | 2031..2304 | 214 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6941 | 1894..2121 | 210 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2460..2587 | 2228..2352 | 209 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2677 | 1983..2334 | 204 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6996 | 2025..2310 | 183 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6449..6956 | 1799..2303 | 179 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6681..7230 | 1814..2343 | 162 | 55 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1164 | 2031..2113 | 162 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1144 | 2024..2117 | 139 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1567 | 2045..2116 | 138 | 69.4 | Plus |
| Dsub\SGM | 823 | Dsub\SGM SGM 823bp Derived from AF043638. | 580..638 | 49..106 | 130 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1522..1578 | 2047..2105 | 118 | 71.2 | Plus |
BS22182.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 13:15:50 Download gff for
BS22182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp2-RE | 842..3218 | 17..2393 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:32 Download gff for
BS22182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp2-RE | 845..3221 | 17..2393 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:25 Download gff for
BS22182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCP2-RE | 845..3221 | 17..2393 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:25 Download gff for
BS22182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15822963..15823181 | 869..1087 | 100 | <- | Minus |
| 3L | 15821447..15822014 | 1826..2393 | 100 | <- | Minus |
| 3L | 15822071..15822808 | 1088..1825 | 100 | <- | Minus |
| 3L | 15823247..15823989 | 126..868 | 100 | <- | Minus |
| 3L | 15825471..15825579 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:32 Download gff for
BS22182.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15814547..15815114 | 1826..2393 | 100 | <- | Minus |
| arm_3L | 15815171..15815908 | 1088..1825 | 100 | <- | Minus |
| arm_3L | 15816063..15816281 | 869..1087 | 100 | <- | Minus |
| arm_3L | 15816347..15817089 | 126..868 | 100 | <- | Minus |
| arm_3L | 15818571..15818679 | 17..125 | 100 | | Minus |
BS22182.pep Sequence
Translation from 16 to 2394
> BS22182.pep
MEIAPLINNAVAVVTASASAAVSASASVGSSSKDDNVNNLALLASLTLQK
VLNINNNNNQHSKNNNHSDNSNSKQHEQQKQQQQPQRRNLDIKSEYDVLN
QLLKTGAVFTATPTAPIAIERRKQTQQQQRPYAQQAHQQQQQKQRLNSSI
SSTHSSTSTNSSYGSSSSEDAAGTSAPTGAGEVVTSAALTPRASTTKASS
NKLPEKSKIPSDILDDLASRFIINVPDMELNNLIRMCFQIELAHWFYLDF
FCAPESGEDGETPKCVQRKLPSVGIKQFAMQLFQHIPFLNKHFGTVDQIL
DEWKNYKLSVPTYGAILVSEDHNHCLLVQSYFARNSWGFPKGKINENEDP
AHCATREVYEETGFDITDLIDANDYIEAFINYQYTRLYVVRNIPMDTQFA
PRTRNEIKCCDWFRIDALPVNKNDAISKAKLGKTSNSFFMIMPFVKRLKK
WVNDRKAGIEPRRRKFSGQQSPKAASPTNMNGNCKKDVTGVRNESQRQRH
KSMGDLDGVKLNNLNGKGTVGTGAGSAASASATAAINSMNICNSNGKRNK
QNAAAGSNQATPTTIATPMTSNGAVVGGTVSSKRQLFHSQSQNDAQQSAS
NEKQIVSSFDLIRKEKQQQLKAAKAQKQQQQQQQRSRTKSQSDKQYNPQQ
PVKILGQQQPTTGMDLIAMLSAAAAAQKTPNNEQQTQEKQQQQQRPRPAS
VSLNLGAGSATGATTSAPDAQYMHRLQRMASGTNLRILKRAQSQQPQQHH
QQQLQLEQQQQQQQQLGIDFTPNLNSWTNFSFTKNFIANVFC*
BS22182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP2-PE | 792 | CG6169-PE | 1..792 | 1..792 | 4071 | 100 | Plus |
| DCP2-PA | 791 | CG6169-PA | 1..791 | 1..792 | 4054 | 99.9 | Plus |
| DCP2-PD | 564 | CG6169-PD | 1..564 | 228..792 | 2938 | 99.8 | Plus |
| DCP2-PB | 564 | CG6169-PB | 1..564 | 228..792 | 2938 | 99.8 | Plus |
| Smr-PF | 3601 | CG4013-PF | 9..238 | 519..765 | 201 | 27.4 | Plus |
