BS22183.complete Sequence
830 bp assembled on 2011-02-02
GenBank Submission: KX803549
> BS22183.complete
GAAGTTATCAGTCGACATGAAACTGTTCGTATTCCTGGCCTTGGCCGTGG
CCGCAGCTACTGCTGTGCCCGCTCCCGCCCAGAAGCTGACCCCGACGCCC
ATCAAGGACATTCAGGGTCGCATCACCAACGGCTACCCAGCCTACGAGGG
CAAGGTGCCCTACATCGTGGGTCTGCTCTTCAGCGGCAACGGAAACTGGT
GGTGCGGTGGCTCGATCATCGGCAACACCTGGGTCCTGACCGCCGCCCAC
TGCACCAACGGAGCCAGTGGAGTGACCATCAACTACGGAGCCAGCATCCG
CACCCAGCCCCAGTACACCCACTGGGTGGGCAGTGGCGACATCATCCAGC
ACCACCACTACAACAGCGGCAACCTGCACAACGACATCTCCCTGATCCGT
ACCCCGCACGTCGACTTCTGGAGCCTGGTCAACAAGGTTGAGCTGCCCAG
CTACAACGACCGCTACCAGGACTACGCCGGATGGTGGGCCGTGGCCTCCG
GATGGGGCGGCACCTACGATGGCAGCCCACTGCCCGACTGGCTCCAGTCC
GTCGATGTCCAGATCATTTCCCAAAGTGATTGCAGCCGCACCTGGTCTCT
CCACGACAACATGATCTGCATCAACACTGACGGAGGCAAGTCCACCTGCG
GAGGCGACTCTGGTGGCCCCCTGGTTACACACGACGGCAACCGCCTGGTC
GGAGTGACCTCCTTCGGATCCGCCGCTGGCTGCCAGTCTGGTGCTCCCGC
CGTCTTCAGCCGCGTCACCGGATACCTGGACTGGATCCGCGACAACACCG
GCATCTCCTACTAAAAGCTTTCTAGACCAT
BS22183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Cii-RA | 798 | CG31034-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
| Jon99Ciii-RB | 798 | CG31362-PB | 1..798 | 17..814 | 3945 | 99.6 | Plus |
| Jon99Ciii-RA | 798 | CG31362-PA | 1..798 | 17..814 | 3945 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Cii-RA | 862 | CG31034-RA | 29..826 | 17..814 | 3990 | 100 | Plus |
| Jon99Ciii-RB | 1240 | CG31362-RB | 27..824 | 17..814 | 3945 | 99.6 | Plus |
| Jon99Ciii-RA | 837 | CG31362-RA | 27..824 | 17..814 | 3945 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29923790..29924587 | 814..17 | 3990 | 100 | Minus |
| 3R | 32079331 | 3R | 29922242..29923039 | 17..814 | 3945 | 99.6 | Plus |
| 3R | 32079331 | 3R | 30488988..30489791 | 17..814 | 2875 | 90.8 | Plus |
| 3R | 32079331 | 3R | 30487094..30487903 | 820..17 | 2830 | 90.2 | Minus |
| 2L | 23513712 | 2L | 4952599..4952996 | 508..114 | 695 | 78.9 | Minus |
| 2R | 25286936 | 2R | 8691581..8691968 | 114..507 | 670 | 79.2 | Plus |
| 2L | 23513712 | 2L | 4949972..4950403 | 814..386 | 655 | 77.3 | Minus |
| 2L | 23513712 | 2L | 4954674..4955009 | 466..128 | 625 | 79.6 | Minus |
| 3L | 28110227 | 3L | 8392871..8393288 | 804..390 | 495 | 75.1 | Minus |
| 3L | 28110227 | 3L | 8391897..8392081 | 383..567 | 460 | 83.2 | Plus |
| 3L | 28110227 | 3L | 6052735..6052876 | 367..508 | 305 | 81 | Plus |
| 3L | 28110227 | 3L | 8393403..8393570 | 254..81 | 280 | 78.7 | Minus |
| 3L | 28110227 | 3L | 6053924..6054062 | 521..383 | 275 | 79.9 | Minus |
| 3L | 28110227 | 3L | 6053626..6053799 | 816..643 | 270 | 77 | Minus |
| 2R | 25286936 | 2R | 8692074..8692284 | 604..814 | 260 | 74.9 | Plus |
| 3L | 28110227 | 3L | 8391658..8391881 | 114..346 | 255 | 76 | Plus |
| 3R | 32079331 | 3R | 29925917..29926066 | 256..110 | 220 | 78 | Minus |
| 3L | 28110227 | 3L | 9640031..9640096 | 750..815 | 195 | 86.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:51:49 has no hits.
BS22183.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:07 Download gff for
BS22183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Cii-RA | 25..820 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:32 Download gff for
BS22183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Cii-RA | 29..824 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:50 Download gff for
BS22183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Cii-RA | 29..824 | 17..812 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:50 Download gff for
BS22183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29923792..29924587 | 17..812 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:32 Download gff for
BS22183.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25749514..25750309 | 17..812 | 100 | | Minus |
BS22183.pep Sequence
Translation from 16 to 813
> BS22183.pep
MKLFVFLALAVAAATAVPAPAQKLTPTPIKDIQGRITNGYPAYEGKVPYI
VGLLFSGNGNWWCGGSIIGNTWVLTAAHCTNGASGVTINYGASIRTQPQY
THWVGSGDIIQHHHYNSGNLHNDISLIRTPHVDFWSLVNKVELPSYNDRY
QDYAGWWAVASGWGGTYDGSPLPDWLQSVDVQIISQSDCSRTWSLHDNMI
CINTDGGKSTCGGDSGGPLVTHDGNRLVGVTSFGSAAGCQSGAPAVFSRV
TGYLDWIRDNTGISY*
BS22183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Ciii-PB | 265 | CG31362-PB | 1..265 | 1..265 | 1465 | 100 | Plus |
| Jon99Ciii-PA | 265 | CG31362-PA | 1..265 | 1..265 | 1465 | 100 | Plus |
| Jon99Cii-PA | 265 | CG31034-PA | 1..265 | 1..265 | 1465 | 100 | Plus |
| Jon99Fii-PA | 267 | CG2229-PA | 1..267 | 1..265 | 1383 | 92.5 | Plus |
| Jon99Fi-PA | 267 | CG18030-PA | 1..267 | 1..265 | 1381 | 92.5 | Plus |
