BS22188.complete Sequence
2804 bp assembled on 2011-02-17
GenBank Submission: KX806154
> BS22188.complete
GAAGTTATCAGTCGACATGAGTGCTGCCGGCTGGCTTGATATGAATGCAG
CTCTTCAGAACCTCGACTCTCCGCCGGAGACAGTGAAAAAGGCCAGAACC
AAACGGAGGAGCAGCTATGCCGGACGAACTACTGCAACGGCCGGAGTACA
TGGACGTGGCAGCATTGGTACCATAAGTTCTGGAATAATCAAATCATTTC
GGGAACGTTTCCTCAGCAACTCATCTGGGGACTCCGGCAAGTATAGAAAA
CTTAGGCAAAGGGATGCCGAGTCTGGCAGAATGGAAGCCAGTGGATCAAG
TTCATCGGGAGAAAATGAGGACCCCAGCAGCAGTAGTAGTGTCGAGGATC
TCTTTGCCAATGAGGCAGAACGTCGCAATTGGCACAGGAAAACCTCGGAG
AAGCGACGAAGGAATGCCAGAAAAAAGAATCTAATGCATACCAAGGAGAA
GAAGCGCCGGGTGCGAATCATCCTGACTGTTGTAACCACGGTCATAGCGG
TTGCTCTATTGGCCACGGCCCTGGTTTTCATTCTCCGGACGGATGAAAAG
GATGCCGACGACTCTGACTCAAACTCAAACAATGCCATCGATTTGGAGGA
TGTGCTAAGTGGTCAACTATATGCCAAGCGATTCAACGGCAGCTGGAGCA
ATGGAAACAGTCTCATTTACAAGGAGAATACGTCCATCATGGAGTTCGAT
GCCAAGACGGGTGAACGTTCCATCCTGCTGGAAGATGCGCAACATTATGT
CCTGTACGAAAAGTCCGCCGATGGGGAGTTCCTTTTGCTGGCAAAGAACT
ACAAGAAGAACTTCCGGTACAGCTTTCTAGCTGAGTACGATCTGTACAAT
CTGAACACAAAAGAATTCATCCAGTTGACCATCCAAAACGAGCAGCACTA
CCTGAGCATGGTCCAATGGTCACCGGTGGGAAATGCCCTTGTGATCAATT
ACGATCGGAATCTGTACTACAAGGAGAGTGCATTGGCGCAGGAGATTGCC
CTCACTAGCGATGAACAAGCGGGTATACTGAATGGCATTCCCGATTGGGT
GTACGAGGAAGAGGTATTCAGCTCCAATGTGGCCACCTGGTTCAACCCAT
CGGGCACCCAATTGGCCTTCATCAAGTTCGACGATTCGTCCACTCACCTG
ATCAATTTCCCCTACTACGGAGATGCCGGCGATTTGCGCTATCAGTATCC
ACTGCATCAGGTCATCGCCTATCCAAAGGCTGGTTCCTCGAATCCGCGGG
TGGAACTGGTGATGGTCGATCTAAAGAGAGCCGTTGCTGGTGGAGATTTC
GTGACCGTGATGCCGGTTCCGTCGGCCCTCAACACGGAAACGGACTACAT
TGTCACCGTGGTCAGTTGGGTGGACGATGACAACGTTCTGTCCATCTGGA
TGAACCGCATTCAAAATGCCGCCTATGTCGTCACCTTCGACGGACTCAAC
AGGAAAGTGATTTATAGTGCCGAATCGAAGACCGGTTGGGTTGATCTCTA
TACCGCTCCGTTCCGTAACCGCAATGGATCCCGTCTGGCCTTCGTCCTGC
CGCACAACAACTATAAGCACGTCCAGCTCCTGAGCTCCACGGTGGCCAGT
TCCGAGCCACAAGCACTGGAGCCCCTGACCGAGGGCAAGTATGTGGTGGA
CAGCATCCTCCACTGGGACGGAAAGAACGACATCATATTCTACACGGCCA
ACACAGAGGATCATCCCGAGCAGCTGCATCTGTACGCCATTCGGGCACTG
GCCAAGCAGAGTCCCAAGTGCCTCACGTGCAACCTTATCAAGTCCGGGGA
TGTGCAACAGACCTACTTCTCGGCCACTTTCAACGACAATAACCACATTG
TGATCACCTCTCTGGGACCTGGAATACCCACAACCCATATATACGAGTGG
AAATATGAGAACTCTCAAGTTGTCATCTCTAAAGTCCTCGACTGGGAAAC
CAATGAAAGCCTGCGTGCCAAACTGAAGGGCGTGGCTCTACCTTCCCACA
AAATTCTAACCGTAGACATTGACGGCGGCTTTCAGGCAAAGGTGCTCCTC
CAGCTGCCGCCCAACTTGGACACAAGTGGCGCAACCAAGTATCCCATGCT
CGTGGATGTCTATGGTGGCCCAGATTCCTATTCTGTTACCAACAAATGGA
TGGTGGACTGGGGCACATATTTGAGCTCCAATCAGTCTGTGATCTATGCC
AAGATCGATGGTCGTGGCTCCGGACTCCGTGGAGAGAGTCTACTCCATGC
CATCTACTTAAAGTTGGGCACCGTGGAGATCAGCGATCAGATCAACGTAA
CTCAAAAACTCTCTACGCTGTTTAACTACATTGATCCCGATCACGTTGGC
ATTTGGGGCTGGTCATATGGTGGCTACGCGGCTGCCATGGCTCTGGCCAA
TGATGAAGCCAAGGTGTTCAAGTGTGCAGCCTCGATAGCTCCAGTCACGG
ATTGGGCTTACTATGACTCCATTTACACAGAGCGCTATATGGGTCTTCCC
AACACGAATGAGCTGGGCTATGCCAACTCTAGACTGAGCACAATGGCCGT
GAAGCTGAGGGGTAAGAAGTACCTTCTGGTACATGGCACACTGGATGATA
ATGTGCACTACCAGCAGGCCATGATATTGGCCAAGAATCTGGAGCGTCAA
GATATTCTCTTCAAGCAGATTAGCTACGCTGACGAGGATCATGGACTGTC
CAATGTGCGACCCCATTTGTATCATTCATTGGATCGCTTCTTTGGCGAAT
GTTTTGCCAGCAGTCGCCTAATGAAAAGTGCCAAATAAAAGCTTTCTAGA
CCAT
BS22188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ome-RE | 2772 | CG42280-PE | 1..2772 | 17..2788 | 13860 | 100 | Plus |
| ome-RG | 3123 | CG42280-PG | 760..3123 | 425..2788 | 11820 | 100 | Plus |
| ome-RF | 2409 | CG42280-PF | 47..2409 | 426..2788 | 11815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ome-RE | 4109 | CG42280-RE | 564..3335 | 17..2788 | 13860 | 100 | Plus |
| ome-RG | 4070 | CG32145-RB | 933..3296 | 425..2788 | 11820 | 100 | Plus |
| ome-RF | 3356 | CG32145-RA | 220..2582 | 426..2788 | 11815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14744530..14745307 | 682..1459 | 3890 | 100 | Plus |
| 3L | 28110227 | 3L | 14745427..14745881 | 1459..1913 | 2275 | 100 | Plus |
| 3L | 28110227 | 3L | 14680377..14680787 | 17..427 | 2055 | 100 | Plus |
| 3L | 28110227 | 3L | 14744187..14744443 | 426..682 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 14745955..14746177 | 1914..2136 | 1115 | 100 | Plus |
| 3L | 28110227 | 3L | 14746707..14746913 | 2465..2671 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 14746235..14746404 | 2135..2304 | 850 | 100 | Plus |
| 3L | 28110227 | 3L | 14746487..14746647 | 2305..2465 | 805 | 100 | Plus |
| 3L | 28110227 | 3L | 14746978..14747094 | 2672..2788 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:36:32 has no hits.
BS22188.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:22 Download gff for
BS22188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RE | 535..3304 | 17..2786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:41 Download gff for
BS22188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RE | 564..3333 | 17..2786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:09 Download gff for
BS22188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RE | 564..3333 | 17..2786 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:09 Download gff for
BS22188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14680377..14680787 | 17..427 | 100 | -> | Plus |
| 3L | 14744189..14744443 | 428..682 | 100 | -> | Plus |
| 3L | 14744531..14745307 | 683..1459 | 100 | -> | Plus |
| 3L | 14745428..14745881 | 1460..1913 | 100 | -> | Plus |
| 3L | 14745955..14746175 | 1914..2134 | 100 | -> | Plus |
| 3L | 14746235..14746404 | 2135..2304 | 100 | -> | Plus |
| 3L | 14746487..14746647 | 2305..2465 | 100 | -> | Plus |
| 3L | 14746708..14746913 | 2466..2671 | 100 | -> | Plus |
| 3L | 14746978..14747092 | 2672..2786 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:41 Download gff for
BS22188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14739587..14739747 | 2305..2465 | 100 | -> | Plus |
| arm_3L | 14739808..14740013 | 2466..2671 | 100 | -> | Plus |
| arm_3L | 14740078..14740192 | 2672..2786 | 100 | | Plus |
| arm_3L | 14673477..14673887 | 17..427 | 100 | -> | Plus |
| arm_3L | 14737289..14737543 | 428..682 | 100 | -> | Plus |
| arm_3L | 14737631..14738407 | 683..1459 | 100 | -> | Plus |
| arm_3L | 14738528..14738981 | 1460..1913 | 100 | -> | Plus |
| arm_3L | 14739055..14739275 | 1914..2134 | 100 | -> | Plus |
| arm_3L | 14739335..14739504 | 2135..2304 | 100 | -> | Plus |
BS22188.pep Sequence
Translation from 16 to 2787
> BS22188.pep
MSAAGWLDMNAALQNLDSPPETVKKARTKRRSSYAGRTTATAGVHGRGSI
GTISSGIIKSFRERFLSNSSGDSGKYRKLRQRDAESGRMEASGSSSSGEN
EDPSSSSSVEDLFANEAERRNWHRKTSEKRRRNARKKNLMHTKEKKRRVR
IILTVVTTVIAVALLATALVFILRTDEKDADDSDSNSNNAIDLEDVLSGQ
LYAKRFNGSWSNGNSLIYKENTSIMEFDAKTGERSILLEDAQHYVLYEKS
ADGEFLLLAKNYKKNFRYSFLAEYDLYNLNTKEFIQLTIQNEQHYLSMVQ
WSPVGNALVINYDRNLYYKESALAQEIALTSDEQAGILNGIPDWVYEEEV
FSSNVATWFNPSGTQLAFIKFDDSSTHLINFPYYGDAGDLRYQYPLHQVI
AYPKAGSSNPRVELVMVDLKRAVAGGDFVTVMPVPSALNTETDYIVTVVS
WVDDDNVLSIWMNRIQNAAYVVTFDGLNRKVIYSAESKTGWVDLYTAPFR
NRNGSRLAFVLPHNNYKHVQLLSSTVASSEPQALEPLTEGKYVVDSILHW
DGKNDIIFYTANTEDHPEQLHLYAIRALAKQSPKCLTCNLIKSGDVQQTY
FSATFNDNNHIVITSLGPGIPTTHIYEWKYENSQVVISKVLDWETNESLR
AKLKGVALPSHKILTVDIDGGFQAKVLLQLPPNLDTSGATKYPMLVDVYG
GPDSYSVTNKWMVDWGTYLSSNQSVIYAKIDGRGSGLRGESLLHAIYLKL
GTVEISDQINVTQKLSTLFNYIDPDHVGIWGWSYGGYAAAMALANDEAKV
FKCAASIAPVTDWAYYDSIYTERYMGLPNTNELGYANSRLSTMAVKLRGK
KYLLVHGTLDDNVHYQQAMILAKNLERQDILFKQISYADEDHGLSNVRPH
LYHSLDRFFGECFASSRLMKSAK*
BS22188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ome-PE | 923 | CG42280-PE | 1..923 | 1..923 | 4798 | 100 | Plus |
| ome-PG | 1040 | CG32145-PB | 251..1040 | 134..923 | 4115 | 99.7 | Plus |
| ome-PF | 802 | CG32145-PA | 16..802 | 137..923 | 4108 | 99.9 | Plus |
| ome-PH | 784 | CG42280-PH | 1..784 | 140..923 | 4097 | 100 | Plus |
| CG11034-PC | 751 | CG11034-PC | 32..741 | 182..912 | 1041 | 33.5 | Plus |
