BS22193.complete Sequence
1098 bp assembled on 2011-01-27
GenBank Submission: KX802127
> BS22193.complete
GAAGTTATCAGTCGACATGTATGCAGACGAAATGGCAATCGCTAGCAACG
TTGTCGAAGCGGGGAACGCGGTTCGCGCGGAAAAAGGCAGAAAATATTTT
TATTTTCGAAAGATGATAGGAGATTATATTGACACCTCTATTCGCATTGT
AGCCACCGTGTTCTTGGCTGATCTGCTCCTTCGCTTGTACCGCTGTGTCG
TCGAATATGGGAGCAATGGGCGGTACTATTTGCCCGAGGATCGGCTGTGG
ATAATCCTGCGGCGCTCGTGCACGTATAACAACAGATCGATATACCTGAT
TGTGGGATTCCTTCTCGTAGCTTTTTTTCGAATTTCGGTTACCGGGAATT
ACAGGAACGTAATGCCCACGACGCTGTTTCTGTTCCAAATGCCGCTCTAC
TGGATATGGAGCTTTACCGATATGGACCAAAGCACCCTGAGCTACTCGCA
CTGGATACGTGACTCCCATGGACTAGACTATGCGGCCGGAATGGCCTCCA
ACTACTTTCACGGCTACCTCAAACTTTCACTGCCCGAACGCAAGGATGAT
GGGCTCAAACATCGATTAGCAATGTACGAGGACAAGAATAATGTTACCTT
CGGCATTAAACGACTGGTTATCCTCATTCCCGATGAGATGTTTGTCAACG
GCGTACTAGAAAGCCACTTACTTGACAAAGCTGAGCCCCTGGAGACCCAG
TTCATCAACCGAGCCGGTGTCTATCGTCCTTTCAAGCACGATGTCTACAG
AATGAACAAAAAGGTCAATGGCAGGACCTATTACTTTGCCGTCGAGGGTG
CCACGCCCATGATATCCTTCTTCGATGCGACGTACTCTAACTTGTCGGGT
ACCTGGCAGATGCAGGAACTAAAGCGAGAGATCTGGATCAAGTTCTACAA
GCACCTGAAAGAACTTATTACTACTTGGCCGGAGACTCGAGACCTTGTAG
AGCTCATCATCTATAACTCCCATGATAGCAAGGGCAACCTGGTGGATGTT
GGCGAATTGCTTGTAGCTCATATGCAAAACAAAACCAAAACTATTGACGA
AATTTCCAACTAAAAGCTTTCTAGACCATTCGTTTGGCGCTCGAAAGG
BS22193.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1667-RC | 1032 | CG1667-PC | 1..1032 | 32..1063 | 5160 | 100 | Plus |
| CG1667-RB | 1032 | CG1667-PB | 1..1032 | 32..1063 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1667-RC | 1576 | CG1667-RC | 208..1254 | 17..1063 | 5235 | 100 | Plus |
| CG1667-RB | 1361 | CG1667-RB | 1..1039 | 25..1063 | 5195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9843959..9844409 | 131..581 | 2255 | 100 | Plus |
| 2R | 25286936 | 2R | 9844620..9844904 | 684..968 | 1425 | 100 | Plus |
| 2R | 25286936 | 2R | 9843789..9843903 | 17..131 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 9844459..9844565 | 579..685 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 9844990..9845084 | 969..1063 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:54:51 has no hits.
BS22193.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:34 Download gff for
BS22193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1667-RA | 207..1258 | 17..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:59 Download gff for
BS22193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1667-RA | 208..1259 | 17..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:28 Download gff for
BS22193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1667-RC | 208..1259 | 17..1069 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:28 Download gff for
BS22193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9844990..9845089 | 969..1069 | 98 | | Plus |
| 2R | 9843789..9843903 | 17..131 | 100 | -> | Plus |
| 2R | 9843960..9844408 | 132..580 | 100 | -> | Plus |
| 2R | 9844461..9844565 | 581..685 | 100 | -> | Plus |
| 2R | 9844622..9844904 | 686..968 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:59 Download gff for
BS22193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5732495..5732594 | 969..1069 | 98 | | Plus |
| arm_2R | 5731294..5731408 | 17..131 | 100 | -> | Plus |
| arm_2R | 5731465..5731913 | 132..580 | 100 | -> | Plus |
| arm_2R | 5731966..5732070 | 581..685 | 100 | -> | Plus |
| arm_2R | 5732127..5732409 | 686..968 | 100 | -> | Plus |
BS22193.pep Sequence
Translation from 16 to 1062
> BS22193.pep
MYADEMAIASNVVEAGNAVRAEKGRKYFYFRKMIGDYIDTSIRIVATVFL
ADLLLRLYRCVVEYGSNGRYYLPEDRLWIILRRSCTYNNRSIYLIVGFLL
VAFFRISVTGNYRNVMPTTLFLFQMPLYWIWSFTDMDQSTLSYSHWIRDS
HGLDYAAGMASNYFHGYLKLSLPERKDDGLKHRLAMYEDKNNVTFGIKRL
VILIPDEMFVNGVLESHLLDKAEPLETQFINRAGVYRPFKHDVYRMNKKV
NGRTYYFAVEGATPMISFFDATYSNLSGTWQMQELKREIWIKFYKHLKEL
ITTWPETRDLVELIIYNSHDSKGNLVDVGELLVAHMQNKTKTIDEISN*
BS22193.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1667-PC | 343 | CG1667-PC | 1..343 | 6..348 | 1810 | 100 | Plus |
| CG1667-PB | 343 | CG1667-PB | 1..343 | 6..348 | 1810 | 100 | Plus |
