BS22195.complete Sequence
1643 bp assembled on 2011-02-14
GenBank Submission: KX804214
> BS22195.complete
GAAGTTATCAGTCGACATGTGGCGCTTGCTTTTGGCACTTTTGCTCGTGA
GTTCGGTGTGCTGTGAATCGGAACTATTTCGTGATGACCTGAGGACCCCG
GAAACGATGGCCTACATCAATGGACTGATGCAGCGGCGGCATCAGATGCA
ACAGGAGGCGCAGCAGCACATTCAGGCGATACCGCCTGCGGTGCCCCTTC
AATCGCCCGGCCTTGTGAACGGCCTTGGCAACCAGAATGACCCTGCGTTG
AATCGCATATCCGGCACTTCGGTGAAACCTTCCAACCTTCCGGCTGCCTA
CTCCAACGGCTATGTGGATCTGGCCACCTCTGATCGGATTGCGAACAGTG
TGCTGAACTTTGCCAACATTCTGGGCCAGCATTTGGCCAACGGTAAAACC
CAGATATACTCTCCCCTGAGCATTGTACACTCGCTGGCTCTGCTGCTCCT
GGGCGCCAAGGGTCGCAGTTACGAGGAGTTGTCCACGGTCTTCGATATTC
CGGACACGTCCAGGCTGCACGAACAGTTCGGCCTGATGCTGCAGGATCTG
CAACAGCCCACCAGGGAGGCGATCTCCGCAGGACGACCGCTGACCGATTG
GCGGGCGAGCAGCGCGATGAGATCCAATCGACGGGCCCAGCGACCCGGTG
CTCATGAGGTGCACCTGGCCAATGGACTGTTCACACAGACCGGCTACACA
CTCAATCCCGACTACAGACGGGTGATCGTCGAGGTCTACGCCTCGGATCT
GCAGATTCAGGATTTCGAGGGCAGTCCGGCGACAGCACGATACAATATCA
ATGCTTATGTGGCGCAGCACACAAAGAATCACATCGAGAACATCATCGCC
AGCGATATTCCGCAGACCACCAGGATGATTCTGGCCAACGCATTGTACTT
TAAGGCATTCTGGGAAACGGACTTTATAGAGTCAGCCACACGTCCGGATA
ACTTCTATCCGAATGGCGAGGGAACGGAGCCGGTGATGAGGGTGCAGATG
ATGGCCACCGGTGGTGCATATCCGTATCACGAGGATCACGAGCTGGGCTG
CAAGATCATTGGACTGCCGTACAGGGGAAATCTGAGCACCATGTACATCA
TCCAGCCGTTTAAGTCGTCGGTGAGGGAGCTAATGGCACTGCAGAAACGT
CTGACGGCGGATAAGATCGAGAGCATGATCAGCCGAATGTACAGACGGGC
CGCTCTGGTGGCATTCCCAAAGATGCATCTTACGGAGTCGGTGAACTTGA
AGACAGTCATGCAGCGAATGGGGCTGGGCGGCATCTTTAGCGCGGTGCAG
AATGATCTCTCGCTCATCGCCACCAACGAGGCCACGAGGACGAATGCGCT
GGGCGGCAACAGCCTGCAGAATCTGGAGGCACAGCGCAGAGCCGGAACGG
GTGGAGCACGTTCCGATCTGGTGGTGGATGACATTGTTCACAAAGTGGAC
TTCACCGTCAACGAGCAGGGCACGGAGGCGGCGGCGTCTTCGGTCACATA
CCTCAAGAAATCCGGTCCCGATGTCCTCTTCCGCGGAGACACTCCATTCA
TGGTCCTTGTGCGCCACGATCCCACGAAACTGGTGCTCTTCTACGGACTC
ATAAATGAGCCCCCGGCGGCCGCTTAGAAGCTTTCTAGACCAT
BS22195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28Dc-RA | 1611 | CG7219-PA | 1..1611 | 17..1627 | 8055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28Dc-RA | 1792 | CG7219-RA | 79..1689 | 17..1627 | 8055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8004651..8005563 | 1627..715 | 4565 | 100 | Minus |
| 2L | 23513712 | 2L | 8006432..8007132 | 717..17 | 3505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:38:19 has no hits.
BS22195.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 18:28:32 Download gff for
BS22195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28D-RA | 122..1732 | 17..1627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:38 Download gff for
BS22195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28Dc-RA | 79..1689 | 17..1627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:19 Download gff for
BS22195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn28Dc-RA | 79..1689 | 17..1627 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:19 Download gff for
BS22195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8004651..8005560 | 718..1627 | 100 | <- | Minus |
| 2L | 8006432..8007132 | 17..717 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:38 Download gff for
BS22195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8004651..8005560 | 718..1627 | 100 | <- | Minus |
| arm_2L | 8006432..8007132 | 17..717 | 100 | | Minus |
BS22195.pep Sequence
Translation from 16 to 1626
> BS22195.pep
MWRLLLALLLVSSVCCESELFRDDLRTPETMAYINGLMQRRHQMQQEAQQ
HIQAIPPAVPLQSPGLVNGLGNQNDPALNRISGTSVKPSNLPAAYSNGYV
DLATSDRIANSVLNFANILGQHLANGKTQIYSPLSIVHSLALLLLGAKGR
SYEELSTVFDIPDTSRLHEQFGLMLQDLQQPTREAISAGRPLTDWRASSA
MRSNRRAQRPGAHEVHLANGLFTQTGYTLNPDYRRVIVEVYASDLQIQDF
EGSPATARYNINAYVAQHTKNHIENIIASDIPQTTRMILANALYFKAFWE
TDFIESATRPDNFYPNGEGTEPVMRVQMMATGGAYPYHEDHELGCKIIGL
PYRGNLSTMYIIQPFKSSVRELMALQKRLTADKIESMISRMYRRAALVAF
PKMHLTESVNLKTVMQRMGLGGIFSAVQNDLSLIATNEATRTNALGGNSL
QNLEAQRRAGTGGARSDLVVDDIVHKVDFTVNEQGTEAAASSVTYLKKSG
PDVLFRGDTPFMVLVRHDPTKLVLFYGLINEPPAAA*
BS22195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn28Dc-PA | 536 | CG7219-PA | 1..536 | 1..536 | 2747 | 100 | Plus |
| Spn42Da-PG | 379 | CG9453-PG | 30..378 | 126..531 | 297 | 26.8 | Plus |
| Spn42Da-PD | 411 | CG9453-PD | 62..410 | 126..531 | 297 | 26.8 | Plus |
| Spn42Da-PA | 392 | CG9453-PA | 30..376 | 126..529 | 294 | 25.8 | Plus |
| Spn42Da-PB | 424 | CG9453-PB | 62..408 | 126..529 | 294 | 25.8 | Plus |
