BS22224.complete Sequence
1343 bp assembled on 2011-01-27
GenBank Submission: KX805123
> BS22224.complete
GAAGTTATCAGTCGACATGTCTGCTGATATTCTGCAGAAATCAAGAGAGC
AGGATGATTCGCACTACTTCGAGCGTGGCGATATATCCAAATACGTAACG
ATGAACGATCACTTGGGTGATTTCGATTGCAACGAGGTGCGCAAGGAAAT
AAGGATGCTGCTCGCCCACGGCGCCAACTTGGATCAGCAGCACCAGCAGC
AGCCACATCGCCACCATGGCGGTCTCACACGAACCATTTCACAGCCGGCC
CAGCTCATCCAGCAGCAGCAGCAGCAACACCAACAGCAGCAGCAGCAGCA
GCCAGCTGTTGCCAGTCTGGTGACCATCACCGAGAACCTGGGCAACATGA
ACCTGCACCGAAAGCTGGAGCGAACCCAATCGGAGCCACTGCCGCCACAG
CAGCCGATGAACACATCCAGATACAAGACCGAGCTGTGCCGCCCGTTCGA
GGAGGCCGGAGAATGCAAGTACGGCGAGAAGTGCCAGTTCGCCCATGGAA
GCCATGAGTTGCGAAACGTGCACCGTCATCCCAAGTACAAGACGGAATAC
TGCCGCACCTTCCACAGCGTGGGCTTCTGTCCCTACGGACCGCGCTGTCA
CTTTGTTCACAATGCGGACGAGGCCCGCGCCCAACAGGCGGCCCAGGCAG
CCAAGTCCTCCACCCAGTCGCAGTCGCAGTCGCAGCAGTCGTCGTCGCAG
AACTTCTCGCCGAAGAGCAACCAGAGCAGCAATCAAAGTAGCAACAGTAG
CAGCAGCAGCAGCAGCAGCGGCGGCGGCGGTGGCGGCGGCAACAGCATCA
ACAACAACAACGGTAGCCAATTCTATCTGCCGCTAAGCCCACCGCTGAGC
ATGAGCACAGGATCGGACCGGGAATCGCCCACCGGATCACTGTCCCTCAG
CCCCACCAACTCGTTGACCAGCTTCCCGTTCCACGATGCCCTGCAGCATG
GATATTTGGCATCGAATGGCGCCAAGAGCAACAGTTCCGCCTCGTCCACA
TCATCGGCCTCTGGAATGGGTCTGGGCATGAGCATGGGCATCGGCCAGGG
CATGATCATCGGTCAGGGCTTGGGAATGGGACATCATGGACCGGCTACAC
CGCCGGAGAGCCCCAATGTGCCCATATCGCCAGTGCATACACCGCCACCG
TACGATGTGGTGGTCAGTGGATCTGGAGCGGGCAACAATAGCGTTGGCAG
CAAGCAGCTCCTGCAGAAGAGCGTCAGCACACCGATGCAGCAGGAGGATA
CGCCCAGGTTGCCGGTTTTCAACCGTCTCAGCTCCGGTGTGGAGGCCTAC
CAGCAGCAGTCCAATTTGGGACTCTAAAAGCTTTCTAGACCAT
BS22224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tis11-RD | 1311 | CG4070-PD | 1..1311 | 17..1327 | 6555 | 100 | Plus |
| Tis11-RC | 1311 | CG4070-PC | 1..1311 | 17..1327 | 6555 | 100 | Plus |
| Tis11-RA | 1311 | CG4070-PA | 1..1311 | 17..1327 | 6555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tis11-RD | 2023 | CG4070-RD | 251..1562 | 17..1328 | 6560 | 100 | Plus |
| Tis11-RC | 5009 | CG4070-RC | 385..1696 | 17..1328 | 6560 | 100 | Plus |
| Tis11-RA | 2157 | CG4070-RA | 385..1696 | 17..1328 | 6560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12678321..12679241 | 408..1328 | 4575 | 99.8 | Plus |
| X | 23542271 | X | 12677736..12678056 | 100..420 | 1605 | 100 | Plus |
| X | 23542271 | X | 12660784..12660867 | 17..100 | 420 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2959 | 181..865 | 277 | 54 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2408 | 717..819 | 219 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2430 | 713..811 | 216 | 68.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 725..811 | 210 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2486 | 683..819 | 209 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2834 | 746..819 | 172 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2828..2996 | 647..820 | 155 | 58.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1163 | 186..293 | 154 | 65.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3233..3371 | 717..859 | 146 | 60.7 | Plus |
BS22224.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:25 Download gff for
BS22224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tis11-RA | 438..1746 | 17..1325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:09 Download gff for
BS22224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tis11-RA | 385..1693 | 17..1325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:10 Download gff for
BS22224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tis11-RA | 385..1693 | 17..1325 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:10 Download gff for
BS22224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12660784..12660867 | 17..100 | 100 | -> | Plus |
| X | 12677737..12678056 | 101..420 | 100 | -> | Plus |
| X | 12678334..12679238 | 421..1325 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:09 Download gff for
BS22224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12554817..12554900 | 17..100 | 100 | -> | Plus |
| arm_X | 12571770..12572089 | 101..420 | 100 | -> | Plus |
| arm_X | 12572367..12573271 | 421..1325 | 100 | | Plus |
BS22224.pep Sequence
Translation from 16 to 1326
> BS22224.pep
MSADILQKSREQDDSHYFERGDISKYVTMNDHLGDFDCNEVRKEIRMLLA
HGANLDQQHQQQPHRHHGGLTRTISQPAQLIQQQQQQHQQQQQQQPAVAS
LVTITENLGNMNLHRKLERTQSEPLPPQQPMNTSRYKTELCRPFEEAGEC
KYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPYGPRCHFVHNA
DEARAQQAAQAAKSSTQSQSQSQQSSSQNFSPKSNQSSNQSSNSSSSSSS
SGGGGGGGNSINNNNGSQFYLPLSPPLSMSTGSDRESPTGSLSLSPTNSL
TSFPFHDALQHGYLASNGAKSNSSASSTSSASGMGLGMSMGIGQGMIIGQ
GLGMGHHGPATPPESPNVPISPVHTPPPYDVVVSGSGAGNNSVGSKQLLQ
KSVSTPMQQEDTPRLPVFNRLSSGVEAYQQQSNLGL*
BS22224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tis11-PD | 436 | CG4070-PD | 1..436 | 1..436 | 2299 | 100 | Plus |
| Tis11-PC | 436 | CG4070-PC | 1..436 | 1..436 | 2299 | 100 | Plus |
| Tis11-PA | 436 | CG4070-PA | 1..436 | 1..436 | 2299 | 100 | Plus |
| Smr-PF | 3601 | CG4013-PF | 190..482 | 51..343 | 165 | 25.5 | Plus |
| Smr-PE | 3601 | CG4013-PE | 190..482 | 51..343 | 165 | 25.5 | Plus |
