BS22238.complete Sequence
2144 bp assembled on 2011-02-17
GenBank Submission: KX805984
> BS22238.complete
GAAGTTATCAGTCGACATGCGCGCGTGTGTATGTGTTTGCGTGCAGTGCG
AAATAGAAACAAGAAAAGCAAGCGAAAAATCACAGAAATTCACAAAAAAA
AAGCCCAACTACTTCCAAAATTGGGCCGCCCGGCGAAGAACCGCAAAAGT
GGCCAAAATTCGGCGAAAACAGCGCAAGTGTGACAAAGCATTCGTGCCGC
TGCAGTCGTCGGCGAAACGGGCGAAAACAAAAGAGAATAGTGTTGATAGT
AATACGAGCGTATTTAGCAGTAGCAGCAGCAGCAGCAGTGGCCGAAGCTT
CGGCAGGGGAACGGAACGGTGGGCGGTGGGTGCAGAAGCGGGCCGGGGAA
CGGCCGAGAACGAAACACTAGCAGTAGCAGCAGCAGCAGCGACAACAACA
AATGCCGGTCGCTTTATCACCGCCGATCTAATCAAAACAGTTAACAGCGA
CAAGCAGCGAGACAGAGTAGCAAAGGGCCACAGGGACGCGAAAAACCCCC
TAGATGCCACCAAACATTTGCGCCTATCGGACTGCTTGCGTACCGTGCAA
AAACTTGCTATTGAACTTGAGAGCGCCGACGCCGGCAGCGACGCCAGCGC
CCAAGCCAACGCTAGCGCCGACGCCAGCAGCGCCGTCATGTCCGAGACGG
GTTGTCGGCACTATCAAAGCTATGTGAAGGAGCACAGCTACGATACATTC
CGGGTCATCGACGCCTACTTCGCTGCTTGCGTCAACAGAGATGCGCGCGA
GCGAAAGGCTATTCACTGCAACTGCTTCGAGTGCGGCAGCTACGGCATCC
AGTTGTACGCTTGCCTGCACTGCATCTACTTCGGATGTCGGGGGGCCCAC
ATCACGAGTCACCTGCGATCCAAGAAGCACAATGTGGCCCTGGAGCTGTC
CCACGGAACGCTCTACTGCTACGCCTGCAGAGATTTCATCTACGACGCGC
GGAGTCGCGAGTATGCGCTGATCAACCGCAAGCTGGAGGCGAAGGATCTG
CAGAAGAGCATCGGCTGGGTGCCGTGGGTTCCCACAACCAAGGAGACCAA
TCTGCTGCTGGCCAATGCGAGGCGTCGGCTGGTGAGGCCCAATCAAACGA
TCGGACTGAGGGGTCTGCTTAATCTGGGCGCCACTTGCTTCATGAACTGC
ATCGTCCAGGCTCTGGTTCACACGCCCCTGCTCAGCGATTACTTTATGTC
AGATCGTCACGACTGCGGCAGCAAGTCATCGCACAAATGTCTCGTTTGTG
AAGTGTCACGTCTCTTCCAGGAGTTCTATTCCGGCTCCCGTTCGCCGCTG
TCGCTGCACCGGCTACTGCATTTAATCTGGAACCATGCGAAGCACTTGGC
CGGCTACGAGCAGCAGGATGCGCACGAGTTCTTCATCGCCACTCTGGACG
TGCTGCATCGGCACTGCGTGAAGGCAAAGGCGGAGCACGAAAGCAAGAGC
AACAGCTCTGGCTCGGGAAGTGGAACCAATTCCAGCAACTCGAGCAGCTC
GCATTGCTACGGCCAGTGTAATTGCATCATTGACCAGATCTTCACGGGCA
TGCTGCAGAGCGATGTGGTGTGCCAGGCCTGCAACGGAGTGTCCACCACG
TACGATCCGTTTTGGGACATTTCGCTGGACCTGGGCGAAACAACAACGCA
TGGTGGTGTTACTCCAAAAACGCTGATAGACTGCCTGGAGCGGTACACTC
GGGCCGAGCATCTCGGATCGGCGGCCAAAATCAAGTGCTCTACCTGCAAA
TCCTACCAGGAGTCCACCAAACAGTTCAGCCTGCGCACTCTGCCCAGCGT
GGTGTCGTTCCATTTGAAACGCTTCGAGCACTCAGCTCTGATCGATCGCA
AGATCTCCTCGTTCATTCAATTCCCCGTGGAGTTCGACATGACGCCCTTT
ATGTCGGAGAAGAAGAACGCCTACGGCGACTTCCGGTTCTCTCTGTACGC
CGTGGTCAATCATGTGGGCACCATCGACACCGGCCACTATACGGCGTATG
TGCGGCACCAGAAGGACACGTGGGTCAAGTGCGATGATCATGTGATAACG
ATGGCATCGCTCAAGCAGGTGCTGGACAGCGAGGGTTATTTATTGTTCTA
CCATAAAAATGTGCTGGAATACGAGTAAAAGCTTTCTAGACCAT
BS22238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| not-RC | 1491 | CG4166-PC | 1..1491 | 638..2128 | 7455 | 100 | Plus |
| not-RB | 1491 | CG4166-PB | 1..1491 | 638..2128 | 7455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| not-RC | 2989 | CG4166-RC | 18..2129 | 17..2128 | 10560 | 100 | Plus |
| not-RB | 2488 | CG4166-RB | 18..2129 | 17..2128 | 10560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18619377..18620193 | 2085..1269 | 4085 | 100 | Minus |
| 3L | 28110227 | 3L | 18621371..18622112 | 758..17 | 3710 | 100 | Minus |
| 3L | 28110227 | 3L | 18620430..18620834 | 1160..756 | 2025 | 100 | Minus |
| 3L | 28110227 | 3L | 18620258..18620371 | 1271..1158 | 570 | 100 | Minus |
| 3L | 28110227 | 3L | 18619165..18619208 | 2128..2085 | 220 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2476 | 266..400 | 155 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2451 | 273..421 | 151 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2374 | 332..400 | 138 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1120..1158 | 362..400 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2618..2657 | 362..401 | 119 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2488..2525 | 364..401 | 118 | 78.9 | Plus |
BS22238.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:23 Download gff for
BS22238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| not-RB | 20..2129 | 17..2126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:52 Download gff for
BS22238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| not-RB | 18..2127 | 17..2126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:35 Download gff for
BS22238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| not-RB | 18..2127 | 17..2126 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:35 Download gff for
BS22238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18619167..18619207 | 2086..2126 | 100 | <- | Minus |
| 3L | 18619377..18620191 | 1271..2085 | 100 | <- | Minus |
| 3L | 18620259..18620369 | 1160..1270 | 100 | <- | Minus |
| 3L | 18620431..18620832 | 758..1159 | 100 | <- | Minus |
| 3L | 18621372..18622112 | 17..757 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:52 Download gff for
BS22238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18612267..18612307 | 2086..2126 | 100 | <- | Minus |
| arm_3L | 18612477..18613291 | 1271..2085 | 100 | <- | Minus |
| arm_3L | 18613359..18613469 | 1160..1270 | 100 | <- | Minus |
| arm_3L | 18613531..18613932 | 758..1159 | 100 | <- | Minus |
| arm_3L | 18614472..18615212 | 17..757 | 100 | | Minus |
BS22238.pep Sequence
Translation from 16 to 2127
> BS22238.pep
MRACVCVCVQCEIETRKASEKSQKFTKKKPNYFQNWAARRRTAKVAKIRR
KQRKCDKAFVPLQSSAKRAKTKENSVDSNTSVFSSSSSSSSGRSFGRGTE
RWAVGAEAGRGTAENETLAVAAAAATTTNAGRFITADLIKTVNSDKQRDR
VAKGHRDAKNPLDATKHLRLSDCLRTVQKLAIELESADAGSDASAQANAS
ADASSAVMSETGCRHYQSYVKEHSYDTFRVIDAYFAACVNRDARERKAIH
CNCFECGSYGIQLYACLHCIYFGCRGAHITSHLRSKKHNVALELSHGTLY
CYACRDFIYDARSREYALINRKLEAKDLQKSIGWVPWVPTTKETNLLLAN
ARRRLVRPNQTIGLRGLLNLGATCFMNCIVQALVHTPLLSDYFMSDRHDC
GSKSSHKCLVCEVSRLFQEFYSGSRSPLSLHRLLHLIWNHAKHLAGYEQQ
DAHEFFIATLDVLHRHCVKAKAEHESKSNSSGSGSGTNSSNSSSSHCYGQ
CNCIIDQIFTGMLQSDVVCQACNGVSTTYDPFWDISLDLGETTTHGGVTP
KTLIDCLERYTRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHL
KRFEHSALIDRKISSFIQFPVEFDMTPFMSEKKNAYGDFRFSLYAVVNHV
GTIDTGHYTAYVRHQKDTWVKCDDHVITMASLKQVLDSEGYLLFYHKNVL
EYE*
BS22238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| not-PC | 496 | CG4166-PC | 1..496 | 208..703 | 2684 | 100 | Plus |
| not-PB | 496 | CG4166-PB | 1..496 | 208..703 | 2684 | 100 | Plus |
| Ubpy-PB | 367 | CG5798-PB | 32..357 | 363..695 | 408 | 30.6 | Plus |
| Ubpy-PA | 896 | CG5798-PA | 561..886 | 363..695 | 408 | 30.6 | Plus |
| CG14619-PB | 337 | CG14619-PB | 11..336 | 364..697 | 388 | 28.7 | Plus |
