BS22247.complete Sequence
3074 bp assembled on 2011-02-18
GenBank Submission: KX806173
> BS22247.complete
GAAGTTATCAGTCGACATGTTTCCACCGCGGTTGCTGCGAATCGCATTTG
TGATATGCCTGCTGATTGTCTTGCTCTCGCCCTCCGCAGACAGTGCACAG
ACCAAGACACGTCGTCGACTGCGGCGTCCCACAACATCGGTCAGCTCCTC
GAGGAGCAACCTCATCGAGTCTAAGAAGTCCACTGAGGCTCCAGAGGCTG
AGAAGCGTATTGACCAGATCACCTCCGCCACCACCACAAGTGCTCGTCGT
ACACGCCTTCGTTCCAAGGCGAAATTGGGAGCAGCTGCAGCTGGAGGAGC
AGCCGTAGCAGCTGGAGGAACTGCTCTCGTGGCCAGTGGATCTTCACTAA
AGGGCAAGAAGACTAAGGTGGACGATGGAACGCCAAAGATTGTGTGCTAC
TACACCAACTGGTCGCAGTACCGTGTCAAGATTGGCAAGTTCGTTCCGGA
GGACATTCCAGCCGATCTCTGCACCCACATTATCTTCGCTTTCGGATGGC
TGAAGAAGAACAAGCTGAGTTCTTATGAGTCCAACGATGAGACCAAGGAT
AATGTCCCCGGACTGTACGAACGTATGATGACCCTCAAAAAGGCCAATCC
TAAATTAAAGATTCTTCTAGCTCTTGGAGGCTGGTCCTTTGGCACCCAGA
AATTCAAGGACATGTCCTCCACGCGATACACCCGCCAGACCTTTGTCTAC
TCGGCCATTCCTTTCCTGCGCAAGCGCGGCTTCGATGGTCTGGATATGGA
TTGGGAATACCCCAAGGGTTCCGATGACAAGAAGAACTTCGTTCTGCTGC
TGAAGGAACTGCGCGAAGCCTTTGAAGCTGAGGCCCAGGAACTGAAGAAG
CCCCGTCTCTTGCTTTCCGCCGCCGTGCCAGTGGGTCCCGACAATATCCG
TGGTGGATATGATGTGCCTGCCATCGCCAGTTATCTGGATTTTATCAATC
TGATGGCCTACGATTTCCACGGAAAGTGGGAACGCGAGACTGGACACAAT
GCCCCACTTTATGCTCCCTCCACCGATTCGGAGTGGCGCAAACAACTGTC
CGTTGACAATGCCGCCAGTTTATGGGTTAAGATGGGCGCTCCCAAGGAGA
AACTGGTCATTGGAATGCCGACCTATGGACGCTCCTTCACTTTGGCTAAT
CCGGATAAGCATGGTCCCAATGCCCCCGCATCGGGGGGTGGACGCGAAGG
TGTCTACACCAAGGAAGGTGGTTTCTTGGCCTACTACGAGATCTGCGAAA
TGCTGCTGAATGGCGCTGTTTATGTGTGGGATGACGAAATGAAGGTTCCC
TATCTTGTTGATGGAGACCAGTGGGTTGGCTTCGATGATGAGCGCGCCAT
TAGGAACAAGATGCACTGGATCAAGTCGAATGGCTTCGGTGGTGCCATGG
TCTGGACCATCGACATGGACGACTTTAAGGGAGAGGTGTGCGGTGGCAAT
GTCAAGTATCCCCTGATTGGAGCTATGCGGGAGGAACTCCTGGGCATTTC
CCGAGGAAAGGAGGCCAAGGATGTTAACTGGACCGCCGTTGCGGCCACAT
TTGAGGATATCGAAGAGAAACCAGAACCCATTAAGATATCTGTGGATGAG
ATTCTCAACAAGGTGCGAAAGCCACAGGTACAGAAGAAGCAGCGCATCAA
GTCTGGAGCAAATGCTGTCGCCTCAAACACTCGTCCTGCCCAGGTGTTCT
GTTATCTGACCAGCTGGTCGGCCAAGCGACCTGGAGCCGGTAAATTCCAG
CCGGAGAACATCGATCCCAAGCTGTGCACCCACATCGTGTATGCCTTCGC
CACTCTTCAGGACTACAAGCTAACAGAGGCCACCGATGATGATCCCGAGA
ATTATGAGAGTGTAATTGCCTTGCGTGACAATAATCCCGATCTGCAGATC
CTTTTGGCCATCGGAGGGTGGGCCTTTGGTTCCACTCCCTTCAAAGAGCT
CACCTCGAATGTGTTCCGTATGAATCAGTTCGTTTACGAGGCCATCGACT
TTCTGCGCGACTATAAGTTCAACGGCTTGGATGTGGATTGGGAGTATCCT
CGTGGTGCTGAAGATCGTGTGGCCTACGTCAGTCTGCTAAAGGAATTGCG
AGTGGCTTTTGAGGGTGAGGCCAAGTCCTCTGGACTGCCACGCCTACTGC
TCACTGCCGCTGTACCCGCCTCCTTCGAGGCCATCGCCGCTGGCTACGAT
GTTCCAGAGATCTCGAAGTACCTGGACTTCATTAACGTGATGACCTATGA
CTTCCACGGACAGTGGGAACGCACAGTGGGACACAATTCGCCTCTGTTTG
CATTGGAATCGGCTACCGGTTACCAGAAGAAACTGACCGTTGATTACAGC
GCGAGGGAGTGGGTGAAACAGGGTGCTCCCAAGGAAAAGCTGCTTATCGG
CATGCCCACCTATGGACGCAGTTTCGAGCTTGTCAATGACACTCAATTCG
ATATTGGATCCCCCTCGTCCGGCGGTGGCAAGGCGGGCAAGTTCACCAAC
GAGGCCGGGTTCCTCAGCTACTACGAGGTCTGCTCCTTCCTGGCGGCAGA
CAACACCACCCTAGTTTGGGACTCGGAGCAGCAGGTGCCCTTCGCTTACC
GCGGCAACCAGTGGGTGGGCTTCGATGATGAGCGTTCTCTCAAGACCAAG
ACGGAATGGCTGAAGGAGCAGGGCTTTGGAGGCATCATGGTGTGGTCCAT
CGACATGGATGACTTCTCCGGTCGCTGCGGCAGTGGTAAGTACCCACTTC
TGACTGCCTTGAACGACGAGCTGAAGGACTACAAGGTGGAGTTGGAATAC
GATGGTCCTTATGAATCCCATGGCCCACGAGGAGCATACACCACCAAAGA
TCCTCATGATGTGACCTGCGCCGAAGAGGACGGACACATCAGCTACCATA
AGGATTGGGCCGACTGCACCCACTACTACATGTGCGAGGGCGAGCGGAAA
CACCACATGCCCTGTCCCGCCAACCTGGTCTTCAATCCGCAGGAGAACGT
CTGCGACTGGCCCGAGAACGTCGAGGGATGCCACACGCCCACGGAGGCGC
CAGCCTAAAAGCTTTCTAGACCAT
BS22247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht7-RA | 3042 | CG1869-PA | 1..3042 | 17..3058 | 15210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht7-RA | 3953 | CG1869-RA | 283..3324 | 17..3058 | 15210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3092152..3093122 | 2650..1680 | 4855 | 100 | Minus |
| 3L | 28110227 | 3L | 3093359..3094317 | 1567..609 | 4795 | 100 | Minus |
| 3L | 28110227 | 3L | 3094378..3094886 | 610..102 | 2545 | 100 | Minus |
| 3L | 28110227 | 3L | 3091614..3091819 | 3058..2853 | 1030 | 100 | Minus |
| 3L | 28110227 | 3L | 3091880..3092083 | 2852..2649 | 1020 | 100 | Minus |
| 3L | 28110227 | 3L | 3093187..3093300 | 1679..1566 | 570 | 100 | Minus |
| 3L | 28110227 | 3L | 3097663..3097745 | 101..19 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:07:22 has no hits.
BS22247.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:39:39 Download gff for
BS22247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht7-RA | 287..3320 | 23..3056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:09 Download gff for
BS22247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht7-RA | 289..3322 | 23..3056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:27 Download gff for
BS22247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht7-RA | 289..3322 | 23..3056 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:27 Download gff for
BS22247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3091616..3091819 | 2853..3056 | 100 | <- | Minus |
| 3L | 3091880..3092081 | 2651..2852 | 100 | <- | Minus |
| 3L | 3092152..3093122 | 1680..2650 | 100 | <- | Minus |
| 3L | 3093187..3093298 | 1568..1679 | 100 | <- | Minus |
| 3L | 3093359..3094315 | 611..1567 | 100 | <- | Minus |
| 3L | 3094378..3094886 | 102..610 | 100 | <- | Minus |
| 3L | 3097663..3097741 | 23..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:09 Download gff for
BS22247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3091880..3092081 | 2651..2852 | 100 | <- | Minus |
| arm_3L | 3091616..3091819 | 2853..3056 | 100 | <- | Minus |
| arm_3L | 3092152..3093122 | 1680..2650 | 100 | <- | Minus |
| arm_3L | 3093187..3093298 | 1568..1679 | 100 | <- | Minus |
| arm_3L | 3093359..3094315 | 611..1567 | 100 | <- | Minus |
| arm_3L | 3094378..3094886 | 102..610 | 100 | <- | Minus |
| arm_3L | 3097663..3097741 | 23..101 | 100 | | Minus |
BS22247.pep Sequence
Translation from 16 to 3057
> BS22247.pep
MFPPRLLRIAFVICLLIVLLSPSADSAQTKTRRRLRRPTTSVSSSRSNLI
ESKKSTEAPEAEKRIDQITSATTTSARRTRLRSKAKLGAAAAGGAAVAAG
GTALVASGSSLKGKKTKVDDGTPKIVCYYTNWSQYRVKIGKFVPEDIPAD
LCTHIIFAFGWLKKNKLSSYESNDETKDNVPGLYERMMTLKKANPKLKIL
LALGGWSFGTQKFKDMSSTRYTRQTFVYSAIPFLRKRGFDGLDMDWEYPK
GSDDKKNFVLLLKELREAFEAEAQELKKPRLLLSAAVPVGPDNIRGGYDV
PAIASYLDFINLMAYDFHGKWERETGHNAPLYAPSTDSEWRKQLSVDNAA
SLWVKMGAPKEKLVIGMPTYGRSFTLANPDKHGPNAPASGGGREGVYTKE
GGFLAYYEICEMLLNGAVYVWDDEMKVPYLVDGDQWVGFDDERAIRNKMH
WIKSNGFGGAMVWTIDMDDFKGEVCGGNVKYPLIGAMREELLGISRGKEA
KDVNWTAVAATFEDIEEKPEPIKISVDEILNKVRKPQVQKKQRIKSGANA
VASNTRPAQVFCYLTSWSAKRPGAGKFQPENIDPKLCTHIVYAFATLQDY
KLTEATDDDPENYESVIALRDNNPDLQILLAIGGWAFGSTPFKELTSNVF
RMNQFVYEAIDFLRDYKFNGLDVDWEYPRGAEDRVAYVSLLKELRVAFEG
EAKSSGLPRLLLTAAVPASFEAIAAGYDVPEISKYLDFINVMTYDFHGQW
ERTVGHNSPLFALESATGYQKKLTVDYSAREWVKQGAPKEKLLIGMPTYG
RSFELVNDTQFDIGSPSSGGGKAGKFTNEAGFLSYYEVCSFLAADNTTLV
WDSEQQVPFAYRGNQWVGFDDERSLKTKTEWLKEQGFGGIMVWSIDMDDF
SGRCGSGKYPLLTALNDELKDYKVELEYDGPYESHGPRGAYTTKDPHDVT
CAEEDGHISYHKDWADCTHYYMCEGERKHHMPCPANLVFNPQENVCDWPE
NVEGCHTPTEAPA*
BS22247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht7-PA | 1013 | CG1869-PA | 1..1013 | 1..1013 | 5404 | 100 | Plus |
| Cht6-PF | 1367 | CG43374-PF | 31..404 | 559..919 | 852 | 44.4 | Plus |
| Cht6-PG | 1580 | CG43374-PG | 31..404 | 559..919 | 852 | 44.4 | Plus |
| Cht6-PH | 2225 | CG43374-PH | 31..404 | 559..919 | 852 | 44.4 | Plus |
| Cht8-PA | 476 | CG9357-PA | 15..475 | 544..1003 | 829 | 37.1 | Plus |
| Cht6-PF | 1367 | CG43374-PF | 31..417 | 124..501 | 796 | 41.8 | Plus |
| Cht6-PG | 1580 | CG43374-PG | 31..417 | 124..501 | 796 | 41.8 | Plus |
| Cht8-PA | 476 | CG9357-PA | 13..402 | 101..493 | 741 | 39.8 | Plus |
