BS22259.complete Sequence
1463 bp assembled on 2012-04-25
GenBank Submission: KX805990
> BS22259.complete
GAAGTTATCAGTCGACATGTGTCGCAGGCGTAAAGGAGGTCGTTGCACCA
AGGGCACAGCGGGCTTCGCTTACGTCGGCGGCGCATGCGTGGTGAACAAG
CGACTGGAGAAGGTGAACAGCGTGGCCATCATCGAGGACACCGGCGGCTT
CAGCGGCATCATCGTGGCTGCCCACGAAGTTGGACATCTGTTGGGAGCGG
TGCACGACGGTTCGCCACCGCCCAGCTACTTGGGCGGACCGGGCGCCCAG
CGGTGTCGCTGGGAGGATGGCTACATCATGTCCGATCTGCGTCACACGGA
GCGGGGTTTCCGATGGTCCGCCTGCACGGTGCAGAGCTTCCACCACTTCC
TCAATGGAGACACGGCCACCTGCCTGCACAACGCCCCTCATGAGGACAGC
GCCCTGGGTAGATCTCTGCCAGGAACCCTGCTCTCGCTGGACGCCCAGTG
CCGCAGAGATCGGGGAACGTATGCCTGCTTCAAGGATGAGCGAGTGTGTG
CCCAGCTCTTCTGCTTCGACGCCCAGACGGGATACTGTGTGGCCTACAGG
CCAGCGGCCGAAGGATCGGCCTGCGGAAATGGTTATCACTGTCTGGATGG
TCGTTGTACACCACTGCCCTCGAACATCATTCCCGATTACGGACACAACT
ATCGTTTAGTCTACAATGTAACCAGCAGCAGCAGCAGCACCAGCAACGGG
GCAAAGCAACAGCCACCGAGCAACAAGGACGAGAATCAGAGACAGCAGCA
GCAGCAGCAACAGGCGCAGCAGCAACTACAGGATGGGCTGCCCGATGAAG
AGAACGAGGCGACTGCCGGCATTCAGAGCAATGAAGCGATTGAGCGGCAA
AAACGTAAGTTCCCCACAACACCCACAGCAGCAACAAGTGCTGCGCAGAA
ATCAGCAACACCAGCAACACCAGCAACATCGGCAACATCAGCAAGACCCA
CACCAACCACCGCCAAACCGATAACCACATCATCATTTCTCGACGCGTAC
TTTAAAAAACTGCAAGCCTTGCATGACGCTGGATCGGCCAGCAGCAGCAC
CACCACCACCACCACCACCTCCGTGTCGTCGTCCGTCAGCTCCGCAACAA
GCAGCAAGCAGCAGCATCCGCAGCAACAGCAGCAGCAGCAAGTGCAACAA
ATTGCGGATGGCAGTCACTTTCTGAAACGTACGCCCCATCGGAGTAGTCT
TAAGGCATACAAAACTAGTAGTAGCAGTAGTAATAACAGCAGTAGTCAGA
CCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATGCGACAAACTACATT
GGCGACACCACAAACAATCAGCCAGCGGTGTTGGACAACAGCGGCAGTGC
GTCGAGCACCACGGAGACCGCCAAGAAACCCAAAATCAAGACACAAAAAC
TAATACGCCGCACACGAGTCATGCAAACGCAAACGCAAACGATCTGAAAG
CTTTCTAGACCAT
BS22259.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9850-RE | 2691 | CG9850-PE | 1261..2691 | 17..1447 | 7155 | 100 | Plus |
| CG9850-RC | 3309 | CG9850-PC | 2529..3309 | 667..1447 | 3905 | 100 | Plus |
| CG9850-RF | 1917 | CG9850-PF | 1261..1912 | 17..668 | 3260 | 100 | Plus |
| CG9850-RC | 3309 | CG9850-PC | 1309..1914 | 62..667 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9850-RE | 4642 | CG9850-RE | 2312..3742 | 17..1447 | 7155 | 100 | Plus |
| CG9850-RC | 5497 | CG9850-RC | 3580..4360 | 667..1447 | 3905 | 100 | Plus |
| CG9850-RF | 3585 | CG9850-RF | 2312..2963 | 17..668 | 3260 | 100 | Plus |
| CG9850-RC | 5497 | CG9850-RC | 2360..2965 | 62..667 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23755771..23756551 | 1447..667 | 3905 | 100 | Minus |
| 2R | 25286936 | 2R | 23757695..23757926 | 586..355 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 23757987..23758151 | 354..190 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 23758474..23758603 | 191..62 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 23757415..23757494 | 666..587 | 400 | 100 | Minus |
| 2R | 25286936 | 2R | 23760621..23760667 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..7054 | 671..944 | 343 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2912 | 704..1347 | 310 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2921 | 867..1432 | 289 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..7091 | 734..1127 | 285 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2932 | 693..1399 | 254 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7042 | 843..1165 | 247 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2511 | 867..1069 | 241 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7242 | 876..1406 | 235 | 55.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1023..1157 | 830..960 | 223 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..7094 | 867..1154 | 221 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2575..2918 | 655..986 | 202 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6885 | 867..985 | 201 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1613 | 864..952 | 143 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1106..1169 | 867..930 | 131 | 67.2 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6593..6628 | 902..937 | 126 | 83.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8049..8084 | 902..937 | 126 | 83.3 | Plus |
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1657..1695 | 1368..1406 | 114 | 76.9 | Plus |
BS22259.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:16:57 Download gff for
BS22259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RB | 805..2234 | 17..1446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:14 Download gff for
BS22259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RE | 2312..3741 | 17..1446 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:38 Download gff for
BS22259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9850-RE | 2312..3741 | 17..1446 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:38 Download gff for
BS22259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23757695..23757926 | 355..586 | 100 | <- | Minus |
| 2R | 23757987..23758151 | 190..354 | 100 | <- | Minus |
| 2R | 23758476..23758602 | 63..189 | 100 | <- | Minus |
| 2R | 23760622..23760667 | 17..62 | 100 | | Minus |
| 2R | 23755772..23756551 | 667..1446 | 100 | <- | Minus |
| 2R | 23757415..23757494 | 587..666 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:14 Download gff for
BS22259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19645510..19645674 | 190..354 | 100 | <- | Minus |
| arm_2R | 19645218..19645449 | 355..586 | 100 | <- | Minus |
| arm_2R | 19645999..19646125 | 63..189 | 100 | <- | Minus |
| arm_2R | 19648145..19648190 | 17..62 | 100 | | Minus |
| arm_2R | 19643295..19644074 | 667..1446 | 100 | <- | Minus |
| arm_2R | 19644938..19645017 | 587..666 | 100 | <- | Minus |
BS22259.pep Sequence
Translation from 16 to 1446
> BS22259.pep
MCRRRKGGRCTKGTAGFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIV
AAHEVGHLLGAVHDGSPPPSYLGGPGAQRCRWEDGYIMSDLRHTERGFRW
SACTVQSFHHFLNGDTATCLHNAPHEDSALGRSLPGTLLSLDAQCRRDRG
TYACFKDERVCAQLFCFDAQTGYCVAYRPAAEGSACGNGYHCLDGRCTPL
PSNIIPDYGHNYRLVYNVTSSSSSTSNGAKQQPPSNKDENQRQQQQQQQA
QQQLQDGLPDEENEATAGIQSNEAIERQKRKFPTTPTAATSAAQKSATPA
TPATSATSARPTPTTAKPITTSSFLDAYFKKLQALHDAGSASSSTTTTTT
TSVSSSVSSATSSKQQHPQQQQQQQVQQIADGSHFLKRTPHRSSLKAYKT
SSSSSNNSSSQTQQQQQQQQQQYATNYIGDTTNNQPAVLDNSGSASSTTE
TAKKPKIKTQKLIRRTRVMQTQTQTI*
BS22259.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9850-PE | 896 | CG9850-PE | 421..896 | 1..476 | 2494 | 100 | Plus |
| CG9850-PD | 913 | CG9850-PD | 421..897 | 1..442 | 1330 | 57.3 | Plus |
| CG9850-PC | 1102 | CG9850-PC | 842..1102 | 216..476 | 1291 | 99.6 | Plus |
| CG9850-PC | 1102 | CG9850-PC | 421..898 | 1..442 | 1288 | 56 | Plus |
| CG9850-PF | 638 | CG9850-PF | 421..637 | 1..217 | 1211 | 100 | Plus |
| CG9850-PA | 639 | CG9850-PA | 421..638 | 1..217 | 1169 | 96.8 | Plus |
| CG9850-PD | 913 | CG9850-PD | 841..904 | 216..279 | 317 | 98.4 | Plus |
