BS22277.complete Sequence
3053 bp assembled on 2011-02-17
GenBank Submission: KX804940
> BS22277.complete
GAAGTTATCAGTCGACATGGCGCTGCGCCTGCGTCGCGACGTGCAGAAGG
CCTCCTACTATGTGTGGTTCCTGGGCGCCGAGGAGGCGAAGGGGCTGCGA
GGCGCCCGCGTCATAAACTCGGTCCTGCCCTATTTGGTGGACAGGTCCCG
CGGCCAGGAGCCGCTCAAGGTCACGCTCCAGGTCTCCCACAAGGGCATCA
AAATCGTCCAGGGTGCCTCGAAGCATCTGATTCCACACAGTGCCATAACC
AGCTCGGTGCAGACTGACGACATCGTCGCCTGCGTCCTGCTGCTCTACAA
TCCGGCCACCAAGTGCCCGCTCCACGTCCATGCCTACCGCTGCGACTCGG
AGACGACGGCGGAGGCACTGCATCTCCAGCTGCAGATCCTCATCAACCGG
CCCGACAATCAGAAGCGTTTCGAGGAGCTGGAGACCAGATTGGGCATCCT
GCCGCCGATTCCCATGAACGGTAGCAACGAGAAGCGCCACGAATCGAATG
GCAAGTCCTCGTCGTCCGGCGGAACAGGTCCGGGATCGCACCATCATCAC
CAACTGCAGTCACAAACATCGGGTGGTTATCGTGAGGGTCGCCGCCACGA
GACCTCATCTCCGAAGAGATTCAGCAGCTCGTTGGGCAGCGATACGGGCA
ACAGCACCCGGGAATCGGAGTGCAGCGAAGAGCACGGCCTGGTTGCTGGT
GGCTCCTCGCCCGTTTCCCGATCGCCGCCGCACGGCAATTCCAAGTCCCA
TCCGCATGCCCATCCACATCATCCGCCACATTCGCTGCACCATCCGCCGT
TGACGCCGCAGCAGAATAGCGACCTCTTCGATTCCCTGGCCGCCGAGCTG
AGGGCCAAGTTGAATGGTAATGGGCCGCCATTGCTGCTACCGCCAAGGGA
TTACGATACGGTGCACCGATCCAAGGGCAACCTGACGGCCATCGAGTTGC
GACGCTGTCGGAACGCACTAATTGTGGGCGGATCGCCGAAGAGTCAGGTG
CCGGGTGTCGCCAATGTGGCCGGCGGAGCGGCGGCCAACGCCAATGGCAA
GCAGGTTTCCTCGCGCGGATCATCGGGCATTGGATCCGATCTGGCACCAA
GTCCCGAGCGTCAGGAGCTCAACAGTTCCAGTGATGACGAGCACTGGTCG
AACGAGGCGGACAACTCGGTTATTGCTCTGAAGCCGTCACAAATCGCATT
GCCCCATCACGCGCAACTCAAGCGAAAGAGCGCCGTCCAGCCGCCGGAGG
ATAGCTATCTGCGGGATCTGCCAGCCAAACCATATCAGCCGCGTCCCAGC
GAAAGGGAATTGGAGCGAGAGCGGGAGCTGGAGAGGAACAGGGAGCGTGA
ACGGGAGAGGGAGCGAGATCGAGATCGAGAGCGAGAGCGAGAGCTCGAGA
GGAACAGAGAACGGGAGCGGGAACGTGACCGTGAGCGCGACCGGGATCGA
GAACGAGAACGAGATCGCGAACGTACCAAGACTCCGGCATCCATTTCGAA
CAAGTCGTGGAGCCGCGAGGATGAGATCAAGCCGATCATAATGCGTCCGG
CCGACTACGATGCCAAGTTCAATCGGGTGATGCAGCAGGAGCAGCAGCAA
GCCGCCGTCAATCATCAGCCGGCCAAATTGAGGGACACGGATAAGTACAA
CGAGATCAATCGTCTGCTGAACAAAAAGTTGGCCCACGAGCCAACGAGGG
ATCGAAAGTCACGCTCTCGTCTGGATGACAACCACGATGATTTCGATGAC
TCGGATCCGGGCAGTGAGTCACTGCCATTGCATCACCAACAGACGCAGGG
CCCACCAGTGCATCACCATCAACGCAAGGAGAATCTCACCGACAAGCAAA
AGTTCATGGAGTATACCAGCAAGAAGCAGCAGCTGCTCAAAAATTACGGT
GCTGGCGAGGATCAGCGCTATCGCCAGCGCTATGTGGAGTCAACGACGGA
GCATCTGCCCCCCTTCGATCATCCCACCGGTGGTGGAGTGACCACATCCA
CGGGTGGCTCGGCGGGTCACAACAAATACGCTGCCGTGCACAGGGGCACG
GATCTGGGACAAAGGACCACGGAACGTCGACATGACAGGGATCGAGGTGA
CAGAGATCATCCCAGGGATGCGGAACGCGAGCGGCGAAGGGATCACGAAC
GCGACAGGGAGCATTCCCGTGATCGCAATCCATACAGGGAGGCCGAGAGT
CTGCCCTATATACAGAGCATGGAGAAGATGATGAAGTCGACGGGCATGCG
TTACGCAGAAGCTACTCCCAAGACCAGGGAACGGGAACGGGAGAGGGAGC
GAGATCGTGACCGGGACTACAGGGAGCCACCGGTCACGCAGAGTTCACAG
CGTGATCGCTTCCACGATGCCAAGGACAAGTTTCGGGCCATGGAACAGCG
TCCGGCGGTAAATCGCTATCCGGACGTGGATGAGCGCGACACACCGCACC
GGGATCCGTATCGGTCGTCATCGCGCCGGCGTCGCGGTTCCGTCGAGCCA
CCCAGCACGTACGAGCAGTGGAGCGAGGAGGAGGAACCGCCGGTGGTGAT
CAGCGAAAAGTCCAATCCACGTGACCTAAACCGATCCCGAGCCAGATCGC
GCGGCGAATGGGAACCGGAGCCACCCAGGCACTTGGAGCGCAGCGTGCGT
GACAGAGAGCGGGATAGAGATCGGGACTACAATCGAGATCAGTCCCGAGA
TCCCTATCGGCATGAGAGGGAGCGTGAAAGACCCGGTGGACGCGCCCACT
CACGCGAATTCCTGCAGAGCGTGGAAACCAAGAATCCATCGACAACGGGT
TCGGGTCGCGGCCACATGGAGCGATATCCCTCACCAGCAGCCACGCCCAT
ACAATCTGTTGATGTAGGCGGAAGTGGTGGTGGTGGTGGTGGTGGTGGTG
GCAGCGGTGCTTCTTCCGGTGGCAATTCGGGCAAGCCACTAACCCAAATG
GCCAAGGGCTATAGGCACAGCTATGCGGAGCCCGTTTTCGCCCGGACCGG
CGGAAGAGTTGGTCTGGCGGCAGTTAATCCCTATTGAAAGCTTTCTAGAC
CAT
BS22277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12075-RE | 3021 | CG12075-PE | 1..3021 | 17..3037 | 15105 | 100 | Plus |
| CG12075-RC | 3021 | CG12075-PC | 1..3021 | 17..3037 | 15105 | 100 | Plus |
| CG12075-RB | 3021 | CG12075-PB | 1..3021 | 17..3037 | 15105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12075-RE | 4590 | CG12075-RE | 676..3696 | 17..3037 | 15105 | 100 | Plus |
| CG12075-RC | 4192 | CG12075-RC | 278..3298 | 17..3037 | 15105 | 100 | Plus |
| CG12075-RB | 4195 | CG12075-RB | 281..3301 | 17..3037 | 15105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8869976..8871880 | 1133..3037 | 9525 | 100 | Plus |
| X | 23542271 | X | 8869211..8869908 | 436..1133 | 3490 | 100 | Plus |
| X | 23542271 | X | 8867995..8868224 | 209..438 | 1150 | 100 | Plus |
| X | 23542271 | X | 8867664..8867859 | 17..212 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:37:02 has no hits.
BS22277.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:23 Download gff for
BS22277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12075-RB | 277..3296 | 17..3036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:46 Download gff for
BS22277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12075-RB | 281..3300 | 17..3036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:19 Download gff for
BS22277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12075-RB | 281..3300 | 17..3036 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:19 Download gff for
BS22277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8867664..8867858 | 17..211 | 100 | -> | Plus |
| X | 8867998..8868224 | 212..438 | 100 | -> | Plus |
| X | 8869214..8869908 | 439..1133 | 100 | -> | Plus |
| X | 8869977..8871879 | 1134..3036 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:46 Download gff for
BS22277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8761697..8761891 | 17..211 | 100 | -> | Plus |
| arm_X | 8762031..8762257 | 212..438 | 100 | -> | Plus |
| arm_X | 8763247..8763941 | 439..1133 | 100 | -> | Plus |
| arm_X | 8764010..8765912 | 1134..3036 | 100 | | Plus |
BS22277.pep Sequence
Translation from 16 to 3036
> BS22277.pep
MALRLRRDVQKASYYVWFLGAEEAKGLRGARVINSVLPYLVDRSRGQEPL
KVTLQVSHKGIKIVQGASKHLIPHSAITSSVQTDDIVACVLLLYNPATKC
PLHVHAYRCDSETTAEALHLQLQILINRPDNQKRFEELETRLGILPPIPM
NGSNEKRHESNGKSSSSGGTGPGSHHHHQLQSQTSGGYREGRRHETSSPK
RFSSSLGSDTGNSTRESECSEEHGLVAGGSSPVSRSPPHGNSKSHPHAHP
HHPPHSLHHPPLTPQQNSDLFDSLAAELRAKLNGNGPPLLLPPRDYDTVH
RSKGNLTAIELRRCRNALIVGGSPKSQVPGVANVAGGAAANANGKQVSSR
GSSGIGSDLAPSPERQELNSSSDDEHWSNEADNSVIALKPSQIALPHHAQ
LKRKSAVQPPEDSYLRDLPAKPYQPRPSERELERERELERNRERERERER
DRDRERERELERNRERERERDRERDRDRERERDRERTKTPASISNKSWSR
EDEIKPIIMRPADYDAKFNRVMQQEQQQAAVNHQPAKLRDTDKYNEINRL
LNKKLAHEPTRDRKSRSRLDDNHDDFDDSDPGSESLPLHHQQTQGPPVHH
HQRKENLTDKQKFMEYTSKKQQLLKNYGAGEDQRYRQRYVESTTEHLPPF
DHPTGGGVTTSTGGSAGHNKYAAVHRGTDLGQRTTERRHDRDRGDRDHPR
DAERERRRDHERDREHSRDRNPYREAESLPYIQSMEKMMKSTGMRYAEAT
PKTRERERERERDRDRDYREPPVTQSSQRDRFHDAKDKFRAMEQRPAVNR
YPDVDERDTPHRDPYRSSSRRRRGSVEPPSTYEQWSEEEEPPVVISEKSN
PRDLNRSRARSRGEWEPEPPRHLERSVRDRERDRDRDYNRDQSRDPYRHE
RERERPGGRAHSREFLQSVETKNPSTTGSGRGHMERYPSPAATPIQSVDV
GGSGGGGGGGGGSGASSGGNSGKPLTQMAKGYRHSYAEPVFARTGGRVGL
AAVNPY*
BS22277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12075-PE | 1006 | CG12075-PE | 1..1006 | 1..1006 | 5345 | 100 | Plus |
| CG12075-PC | 1006 | CG12075-PC | 1..1006 | 1..1006 | 5345 | 100 | Plus |
| CG12075-PB | 1006 | CG12075-PB | 1..1006 | 1..1006 | 5345 | 100 | Plus |
| CG12075-PA | 1006 | CG12075-PA | 1..1006 | 1..1006 | 5345 | 100 | Plus |
| CG12075-PD | 994 | CG12075-PD | 1..994 | 1..1006 | 5257 | 98.8 | Plus |
