BS22280.complete Sequence
2909 bp assembled on 2011-02-18
GenBank Submission: KX806408
> BS22280.complete
GAAGTTATCAGTCGACATGGAATGCCTGCCGATGAGCAGTGCTGCCCATC
ACCCACATCTGATGGCGGGTGCATCGGCGGTAGGAGCCGTTTCCGCCTCT
CCCACGGCGACCGTGGTGGTGGGTGCCACGTATCCGCACCACCTGCACCA
CCACCACTTGAGCCACCACACGCCGTACAGCAATAGCTACGGGAGCCACC
ACATACACAGCGAGCAAACCAAGTCGCTGCAGGAGCTGCAGCACGAGGTT
GGCGCTCTGCTGGAGTTCCGGGACCTGGTCATAGAAACTTTTCCCGACCT
CAAGCACAAGATGGCCTCCATGTCCGCAACGCCCTCGACTCCCACGTCTT
CGGTGGGTGCCATCGGTGGCAGTCACTCGGTAGGTGGCGGCAGCTCCTCT
CTGGCCACCAGACGTGAGTGGGAGCCGGGCATACGGATGAAGCGAAAACA
GTCGCACAAAGAACCGTCCACGTCGTCAGCGGCAGCTGCTCCTTCCTCCG
GAGCTGAGGCGTCGTCCTCGTCGCTGACACGCAGCCGTAGCAACTCGCAC
AGCGGCAAGAAAGAGCCAAAGAGCGGAGAGAACAACAACGGAAGCGTTGT
GCAAGACTCCGGCTTCTCAACGGAGACCAGTTCCTCCAAGGAGGGCCACA
GTGCCTCCTCCACCAACGGTGCTATGACGGTGGCCATAGCAGCGAATCGC
CTGAGCTGCGCGGAATCGGACGATGAGTTGCTCAACCTGCTGGACGTTAT
TCACCGCAAGTCCAATCGATTACGCGAGGAAGTGGAGCACTTGCAGAGCT
ATGAGCGCCAGCACGGGGATGCTCAGAAGACAGGAGGCGAAGGCCAGGGT
GCGAGCAAGGAGGGAATGACAGCGCAGCAGTTCCGAGAGCAGGTGGAGCG
ATTAAATCGCGAGGATATCAAACAGCTGCGCAAGGAGCGCGACCGTCTGC
TTGACAAGTTGGCCGAAATGGAGGCGGAAACGCTGACCGGACGCATTAAG
GCGGCCAAGATGAGCGACCAGGTGGAGGAGTTGGTAGGAGTGAAGAAAGA
TCTCGAGGAGCAGCTGAAACTGGCGATGGCCCAAAAGCTAGAGTTGAGCT
CGCGGGTGCAACAGTTGCAGCAGCAGCAGCAAAGTAAAAGCTCTTCCAGC
GGCAGTCAGTCGGATTACTCCAGTCAACGCAACTTTCTATCCTCAGCTAC
CACGGTGCTCTCCAATGGCAGTCGTCCTAGCAGCAACGTCATCAGCAATA
ACACATTCCAGCCGGTCGTACTTGATCAGCCAGCGCAGGAAGCATTCCAT
CAAAGCCCAGGCAGTGATATTCCATTGAGAAAACAGCAACAGCAATCCTT
GGGACGTCTTGATGGCATCGTTAGCACGCCCGGAACGCGCAACTCCAAGT
GCCGTTTGACCGACTCCAAGCGATTTGCGGCCATTTTGTTGGAAACTAAT
GTATTGGAGCTGCAGCGCCACTTGCTCACCCTCACCGTGCAGAACCAGGT
GCTGGCCCAAAAGCTGGAATCGTCCAGCAAGTCCAAGACGCTGCTGGCCA
AGCGGCTGGACAAAAACAGCGAGGAGTTCGAACATTTGCGCTACCAGCTG
GAGGAGAAGAATATTGAGCTTGAGGGCACCAAGGCGCAATTGCGGCTGGT
AGAGTCTCGTCTGCAGGCGAGCAATAGCACCAGCAACTCGTATCTGCACT
CCTCACAGCACGACTACGAGACCAATCGCTCTTCGGCTTCCACCACGCTA
ATGCTGAGTCGTCGTGGAGTTTCCGATTCGGTGGACTCTACCTCGACGGC
TATGCCTGCCCCGCCAGTCACACAGATCAGTACGCCCAGCATGAAGGCCA
TGGTGCCGCTGGCCATGGATGAGCTGCAGCAGCACAGTAGTAGCACGGAG
TCGGCGCACGAACACGAGAATCAAGGGCTTCAAACACCCAACAGCACCAG
CTCTCCCCTCAGTAAGACGATCATAAATGCAAGTCCCTGTCCGGTGGGAA
GCAGTACGCCCAGTAATATAGCTGCCCGTGTGATGAGCATCAGCGTGGGT
GGAGTGAGTCCGTTTGAGGCCATGACTCCTCCGCCGCGACAAAATGCGTT
CCGAAAGTTTGGAAGTGCCAGCAAGCCCAGCAAGATTCCGTTGCCGGGCA
GCAAGGCGGCGGCCTATTTTTCGGGCAAACCGCCAACGGGAAGACCGTCG
ACGGCGGGAAGATCTCCTCCATCGGCGAACAATTCAAGTAGCACCTCGTA
TGGCAGTAAATCCTCGTTGAGCAGAAGTACGGGAAATTTGCAGAGCCTGC
GAAGAGCAGAGACGTCCGCCTCCAATCACTCGCTGAGTACGAATACGAGC
CGGAGTTCTACTTCCTCTTCGATACCGCTGGCCACCACACCTTACTCATC
CGGCTCGACTGGCAATCGCAGCCAGCCGACAGCCGCAACGACTCCGTCCC
CGCGTGTGCTCCAGAACTCACCGCTGCCCAAGCTGAAGCGGGATACGATC
AGCTCGAGGGTGCGTCATCTGGACTCCCTGTCACGTGCCCAGCAGACGCC
GGAGGGCCTGAAGGGTACCACCACCAACTCCACCTCCATTGCCGCTCAGC
TGAGCTCGACTCTGCGCAAAGATCTCCAGCTGAGTGGAAACGGGACCGGA
GCTCCCTATAATCAGCACCACCTGAATCACAGGCGCAGTGGTCACTCGCC
GGCCTCGAACTCCTCTGGCAGCGGCGTGTCCAGGCGTTACAGTAGTGCCT
CGACTGGGGGGTCCGGTGGTCGAGCCATCGGCCGGGATCAGGGTGAGCCC
ACCACGCCCACATCCAGCTATGGCGGCGACAGTGATAGTGGCAAGATACA
AGCCACTTATCCTAACAAACGCCAGGCTACACTGAGAAAATAAAAGCTTT
CTAGACCAT
BS22280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:27:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jvl-RC | 2877 | CG43162-PC | 1..2877 | 17..2893 | 14385 | 100 | Plus |
| jvl-RE | 2877 | CG43162-PE | 1..2877 | 17..2893 | 14385 | 100 | Plus |
| jvl-RA | 3462 | CG43162-PA | 582..3462 | 16..2893 | 14325 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jvl-RC | 3889 | CG43162-RC | 895..3772 | 16..2893 | 14390 | 100 | Plus |
| jvl-RE | 4993 | CG43162-RE | 378..3255 | 16..2893 | 14390 | 100 | Plus |
| jvl-RA | 6436 | CG43162-RA | 1178..4058 | 16..2893 | 14325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14789554..14791256 | 1147..2849 | 8500 | 99.9 | Plus |
| 3R | 32079331 | 3R | 14789025..14789495 | 679..1149 | 2355 | 100 | Plus |
| 3R | 32079331 | 3R | 14788224..14788619 | 16..411 | 1980 | 100 | Plus |
| 3R | 32079331 | 3R | 14788696..14788968 | 409..681 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 14793441..14793490 | 2844..2893 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:27:38 has no hits.
BS22280.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:38:05 Download gff for
BS22280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3563-RC | 862..3729 | 17..2884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:51 Download gff for
BS22280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jvl-RE | 345..3212 | 17..2884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:08 Download gff for
BS22280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jvl-RE | 379..3246 | 17..2884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:08 Download gff for
BS22280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14788225..14788619 | 17..411 | 100 | -> | Plus |
| 3R | 14788699..14788966 | 412..679 | 100 | -> | Plus |
| 3R | 14789026..14789495 | 680..1149 | 100 | -> | Plus |
| 3R | 14789557..14791252 | 1150..2845 | 100 | -> | Plus |
| 3R | 14793443..14793481 | 2846..2884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:51 Download gff for
BS22280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10613947..10614341 | 17..411 | 100 | -> | Plus |
| arm_3R | 10614421..10614688 | 412..679 | 100 | -> | Plus |
| arm_3R | 10614748..10615217 | 680..1149 | 100 | -> | Plus |
| arm_3R | 10615279..10616974 | 1150..2845 | 100 | -> | Plus |
| arm_3R | 10619165..10619203 | 2846..2884 | 100 | | Plus |
BS22280.pep Sequence
Translation from 16 to 2892
> BS22280.pep
MECLPMSSAAHHPHLMAGASAVGAVSASPTATVVVGATYPHHLHHHHLSH
HTPYSNSYGSHHIHSEQTKSLQELQHEVGALLEFRDLVIETFPDLKHKMA
SMSATPSTPTSSVGAIGGSHSVGGGSSSLATRREWEPGIRMKRKQSHKEP
STSSAAAAPSSGAEASSSSLTRSRSNSHSGKKEPKSGENNNGSVVQDSGF
STETSSSKEGHSASSTNGAMTVAIAANRLSCAESDDELLNLLDVIHRKSN
RLREEVEHLQSYERQHGDAQKTGGEGQGASKEGMTAQQFREQVERLNRED
IKQLRKERDRLLDKLAEMEAETLTGRIKAAKMSDQVEELVGVKKDLEEQL
KLAMAQKLELSSRVQQLQQQQQSKSSSSGSQSDYSSQRNFLSSATTVLSN
GSRPSSNVISNNTFQPVVLDQPAQEAFHQSPGSDIPLRKQQQQSLGRLDG
IVSTPGTRNSKCRLTDSKRFAAILLETNVLELQRHLLTLTVQNQVLAQKL
ESSSKSKTLLAKRLDKNSEEFEHLRYQLEEKNIELEGTKAQLRLVESRLQ
ASNSTSNSYLHSSQHDYETNRSSASTTLMLSRRGVSDSVDSTSTAMPAPP
VTQISTPSMKAMVPLAMDELQQHSSSTESAHEHENQGLQTPNSTSSPLSK
TIINASPCPVGSSTPSNIAARVMSISVGGVSPFEAMTPPPRQNAFRKFGS
ASKPSKIPLPGSKAAAYFSGKPPTGRPSTAGRSPPSANNSSSTSYGSKSS
LSRSTGNLQSLRRAETSASNHSLSTNTSRSSTSSSIPLATTPYSSGSTGN
RSQPTAATTPSPRVLQNSPLPKLKRDTISSRVRHLDSLSRAQQTPEGLKG
TTTNSTSIAAQLSSTLRKDLQLSGNGTGAPYNQHHLNHRRSGHSPASNSS
GSGVSRRYSSASTGGSGGRAIGRDQGEPTTPTSSYGGDSDSGKIQATYPN
KRQATLRK*
BS22280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jvl-PC | 958 | CG3563-PC | 1..958 | 1..958 | 4816 | 100 | Plus |
| jvl-PE | 958 | CG43162-PE | 1..958 | 1..958 | 4816 | 100 | Plus |
| jvl-PA | 1153 | CG3563-PA | 195..1153 | 1..958 | 4804 | 99.9 | Plus |
| jvl-PB | 959 | CG3563-PB | 1..959 | 1..958 | 4804 | 99.9 | Plus |
| jvl-PG | 1120 | CG43162-PG | 1..943 | 1..943 | 4740 | 100 | Plus |
