BS22290.complete Sequence
1841 bp assembled on 2011-02-14
GenBank Submission: KX804978
> BS22290.complete
GAAGTTATCAGTCGACATGCGCGATAACGAAGATGATCTCTACCGGGAGC
GTCTGCCGAACGTTTGCGGTGCCGTGAGCTCAAAGGCGAGGAGCTGCTGC
AGCATGCGCTCCGTCCACAGATACCTGCCCGTCACCGATTGGCTGCCCAA
GTACCAGTTGAACTTCCTGGCCATGGATGTGGTGGCGGGTCTCACCGTGG
GCCTCACAGCCGTGCCACAGGCCATAGCCTACGGAGCTGTGGCCAATCTG
CCACCAGCCTATGGGCTCTACTCCGCTTTTATGGGTGGATTTGTGTACAT
ACTGCTTGGAACTTGTAAGGATATCACAGTGGGCCCTACGGCCATCATGG
CGCTTATGGTGCAGCCATATGTGGACGGCAACCCAGCGTATGCGGTGCTA
ATATGCTTTCTGTCCGGCTGCATCATCACCCTAATGGGTTTACTCAATCT
CGGAGTGCTCATGCGGTTCATATCGGTGCCGGTGACCACGGGTTTTACGA
TGGCAGCCGCCCTAACCATTGCCACCGGCCAGGTTAATAGCCTCTTTGGC
ATTAGCAGTAGTGCCAGTGGGTTCCTTAACAGCTGGATATACTTCTTCGG
TCACATAACACAAACACGCCGAAATGATGCCATCCTCGGCTGCTGCACAC
TTGTGCTCCTGCTGCTCATGAGGCAACTGAAAAACCTAACTTTCGGCTTC
AAAAGCGTGTGGAAGTATATTTCACTGGCCCGCAATGCTGTGGCCGTGTT
AATTGGCATACTCCTGTGCTATCTTCTGAAGAACGATGGCAAACTGCCCT
TTCTAGTCAGCGGCAGCATCACTCCAGGCCTGCCGCCTTTCAAGCTTCCC
CCTTTTCACACGGAGGATCCAGAGACTGGAGAAACCATTAGCTTCGGTGG
CATGGTATCGAACGTAGGCACTGCCCTGGTGTCCATACCACTGTTGTCCA
TATTGGAGAGCATAGCTGTGGCCAAGGCCTTCTCCAAGGGCAAGATAGTG
GACGCATCGCAGGAGATGATTGCCCTGGGCGTCAGCAACATCCTCAGCAG
CTTCTTCTCCTCCATGCCTATCACTGGATCCTTTACAAGGACAGCCATCA
ACAACGCCAGTGGAGTAAAAACCCCGCTGGGTGGTGCGGTTACCGGCGCT
CTCGTCCTCATGACCCTGGCCTTCCTCACCACCACATTTGCCTACATTCC
GAAGGCGACCCTGGCAGCCATCATCATTGCAGCCATGTTCTTTATGGTGG
AGTACGAGACCATTGGCGAGATTTGGCGGGCTAAAAAGCGCGATATGCTG
CCTTTCCTGGTTACCGTGCTGACCTGTGTCTTCTGGACCCTGGAGTACGG
AATGGTGGTGGGCATCGTCTTCAATGCGCTTTTCCTGCTCTACAAGAGCA
TGAAGCCGCAGTTTTTCTTGACAACCGAGAAGTTTAACGGCATTGAGGTG
ACCATGGCCGATCTCAAGGGCAGCGTGGACTACGCGGCAGCCGAGTACTT
GAAAATGTCGCTTGTGTCGCACGTGACGCAAAGAAACAGCGAGGGAAGTG
CCCCCACCACACTGGTGGTCATTAAGGGACACGAGATTGCCTCAATTGAT
ACGACAGTGGCTTTGAACCTCAAGTCACTGCGCGAAGATCTCGCCCTGCT
GAAGTGCGACATGATCTGCTGGAATTGGAGTATTCCGGCGGCGGGAGTGA
TTTGCCGGATGGACAGGAAGCTGCGCAGTATGTTCAAGTTCTCGAAAAGC
TTTCCAGACCTAATGCAAACAATTGCGGATGCCGAGGCAGCCGATTCGTG
TATCGCCGTTGACTTGAGTCAATAAAAGCTTTCTAGACCAT
BS22290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:39:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7912-RA | 1809 | CG7912-PA | 1..1809 | 17..1825 | 9045 | 100 | Plus |
| CG5002-RA | 1788 | CG5002-PA | 952..1158 | 974..1180 | 270 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7912-RA | 1992 | CG7912-RA | 155..1970 | 11..1826 | 9080 | 100 | Plus |
| CG5002-RA | 1998 | CG5002-RA | 1094..1300 | 974..1180 | 270 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30007532..30007873 | 673..332 | 1710 | 100 | Minus |
| 3R | 32079331 | 3R | 30007148..30007458 | 983..673 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 30006785..30007087 | 1286..984 | 1515 | 100 | Minus |
| 3R | 32079331 | 3R | 30007932..30008234 | 333..31 | 1515 | 100 | Minus |
| 3R | 32079331 | 3R | 30006056..30006267 | 1826..1615 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 30006337..30006521 | 1615..1431 | 925 | 100 | Minus |
| 3R | 32079331 | 3R | 30006577..30006722 | 1432..1287 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 17752136..17752330 | 986..1180 | 255 | 75.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:39:44 has no hits.
BS22290.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 18:28:37 Download gff for
BS22290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7912-RA | 161..1967 | 17..1823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:13 Download gff for
BS22290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7912-RA | 161..1967 | 17..1823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:42 Download gff for
BS22290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7912-RA | 161..1967 | 17..1823 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:42 Download gff for
BS22290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30006059..30006266 | 1616..1823 | 100 | <- | Minus |
| 3R | 30006337..30006519 | 1433..1615 | 100 | <- | Minus |
| 3R | 30006577..30006722 | 1287..1432 | 100 | <- | Minus |
| 3R | 30006785..30007087 | 984..1286 | 100 | <- | Minus |
| 3R | 30007148..30007457 | 674..983 | 100 | <- | Minus |
| 3R | 30007532..30007872 | 333..673 | 100 | <- | Minus |
| 3R | 30007933..30008232 | 33..332 | 100 | <- | Minus |
| 3R | 30009014..30009029 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:13 Download gff for
BS22290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25831781..25831988 | 1616..1823 | 100 | <- | Minus |
| arm_3R | 25832059..25832241 | 1433..1615 | 100 | <- | Minus |
| arm_3R | 25832299..25832444 | 1287..1432 | 100 | <- | Minus |
| arm_3R | 25832507..25832809 | 984..1286 | 100 | <- | Minus |
| arm_3R | 25832870..25833179 | 674..983 | 100 | <- | Minus |
| arm_3R | 25833254..25833594 | 333..673 | 100 | <- | Minus |
| arm_3R | 25833655..25833954 | 33..332 | 100 | <- | Minus |
| arm_3R | 25834736..25834751 | 17..32 | 100 | | Minus |
BS22290.pep Sequence
Translation from 16 to 1824
> BS22290.pep
MRDNEDDLYRERLPNVCGAVSSKARSCCSMRSVHRYLPVTDWLPKYQLNF
LAMDVVAGLTVGLTAVPQAIAYGAVANLPPAYGLYSAFMGGFVYILLGTC
KDITVGPTAIMALMVQPYVDGNPAYAVLICFLSGCIITLMGLLNLGVLMR
FISVPVTTGFTMAAALTIATGQVNSLFGISSSASGFLNSWIYFFGHITQT
RRNDAILGCCTLVLLLLMRQLKNLTFGFKSVWKYISLARNAVAVLIGILL
CYLLKNDGKLPFLVSGSITPGLPPFKLPPFHTEDPETGETISFGGMVSNV
GTALVSIPLLSILESIAVAKAFSKGKIVDASQEMIALGVSNILSSFFSSM
PITGSFTRTAINNASGVKTPLGGAVTGALVLMTLAFLTTTFAYIPKATLA
AIIIAAMFFMVEYETIGEIWRAKKRDMLPFLVTVLTCVFWTLEYGMVVGI
VFNALFLLYKSMKPQFFLTTEKFNGIEVTMADLKGSVDYAAAEYLKMSLV
SHVTQRNSEGSAPTTLVVIKGHEIASIDTTVALNLKSLREDLALLKCDMI
CWNWSIPAAGVICRMDRKLRSMFKFSKSFPDLMQTIADAEAADSCIAVDL
SQ*
BS22290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7912-PA | 602 | CG7912-PA | 1..602 | 1..602 | 3063 | 100 | Plus |
| CG5002-PA | 595 | CG5002-PA | 1..577 | 1..583 | 1747 | 57.1 | Plus |
| Esp-PB | 654 | CG7005-PB | 73..599 | 25..541 | 1023 | 40.8 | Plus |
| Esp-PA | 654 | CG7005-PA | 73..599 | 25..541 | 1023 | 40.8 | Plus |
| CG9702-PB | 676 | CG9702-PB | 54..657 | 21..594 | 951 | 36.3 | Plus |
