BS22302.complete Sequence
1931 bp assembled on 2011-02-17
GenBank Submission: KX803513
> BS22302.complete
GAAGTTATCAGTCGACATGGTAGAAGGTGATTCCGCAAAGGGCAAAAGCG
AATTCTATAATGTAGAAGCTGGACTACAACCGAACTACAACCAGAGCGCA
GCAAGCAACCAAGCAAGCAACCATCCCACTGGCCAGGCCAACGCACCAGC
CACCGGAAACGCGACTTCGCACATCGACAACCGAGCGATCATCCAGCCGT
ACTCCTTGGGCACCGGACCCAAGCAGCCGGAGTATCAATTTGCGGCGGAC
AATCGCGGCTACGAGCCGGACAGCCATGCCAATGGCAAGCAGCAGGACGT
AGAGCGGGACGCCCCCGATGGGGGTCACGGGGGTCACGGGCCGCCCGGCA
AGGGGGGCAAGGGTGGTAAGGGACGCAAGAAGTCCGTACCCTTGCCGGAA
CCCACTGCCCCAATAGTCGCCAATTTCGAGAGGGCCATCGAATTGTGCGG
CTATGGCAAGTTCCATTATATACTGCTGGCCATCTGCGGATTGGTCAGCA
CGTCCGAGGAAATGGATGTCATATCCATGTCCTTCATTCTGCCATCGGCG
GAGTGTGACCTGGATTTGAATACGGAGACCAAGGGCTGGCTGAACTCGAT
CATCTTCATCGGCATGATGGTGGGCGCTTACTTCTGGGGCAGCATCGCCG
ATAGCTTTGGCCGCAAGAAGGTCCTCATCGTCATCTCGTTCATGAACGCC
TTCTGCATCGTTGCGTCGTCCTTCTCGCAGACATACTCGTTCTTCATGCT
GTTCCGCTTCCTCAATGGTGCAGCTTTGGGCGGCAGTGGTCCTGTGATCT
GGTCGTACTTCGCCGAATTCCAGCCCAAGGCGAAGCGCGGCTCCATGCTG
AGCTTCATGGCCGCCTTCTGGACGTTTGGCAATCTGTTCGTGGCCAGCTT
GGCCTGGCTGATCATCCCGCGAACGATTGGCTTCACCACGCCGTACTTCA
CATACAACTCGTGGCGTATCTTTCTGCTGGTCTGCTCACTGCCCTCGTTC
CTCGTGGGATTCCTTCTCTTCTATCTGCCCGAATCGCCCAAGTTTCTGCT
GACGCGCGGCAAGAAGGATCGCGCTCTGGCCATTTTCCGTGGCATTTTCG
TAACGAACACGAAACGCCGTCCGGACGAGTACATGGTCTACGACCTGGAA
GTGGACGAGAAGCTGCTGGAGAGCAATGGCAATGTGAAGAACAAATATAG
CCGCATGATCAGCGGAATGGTTGACCACAGTCGCGCCCTGTTCAAGTCGC
CCATACTGCGTTTCACTATCGTTTCGATTACGATCAACTTTACATTCCAC
ATTGGCTACTATGGCCTGTTGATGTGGTTCCCGGAGCTCTTCAATCGCTT
CGAGGAGTACGAGAAGGCATTCCCAGATCAGTCGGCCGGCGTTTGTGCTG
TCACAGACTATGTGGTCAACCTGGCCAAGGAGCAAAGCAACAATGGTACC
TGCTCATCGGATATACCGCAATCGGTGTTCATGGAATCGCTGATATCACT
AGCCTCAGCGCTGCCGGCCAATCTGCTGGCCATTCTGGGCATGGACATGC
TGGGCAGGAAGTTCTTCCTAATCGCCGGTACCATGACCGCCGGCATCTGC
TCGGCGTTGATGTACTTTGTGCGCAGCTCCGTTCAGAACCTGGTCGTATC
GGCCATTTTCAGTGGTGCCATTTCGGCGGCCAATGCAGCGCTCGACTGCC
TCATCACCGAAGTATTCCCCACCAAGCTGAGAGCCACCGGCGTGGCCATT
TCAATGGTGGCCGCTCGCTTGGGCGGCATCATTGGCAACATCGTGATTGC
CCAGCTGCTGGACAACTACTGTCCATCGCCCACGTTCATCGTGTCGGGTC
TGCTCATCGGCGGCGGTCTCATGTGCCTCCTGTTGCCCAATACGACGCGC
AAGGAACTCAATTAAAAGCTTTCTAGACCAT
BS22302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3168-RG | 1899 | CG3168-PG | 1..1899 | 17..1915 | 9495 | 100 | Plus |
| CG3168-RF | 1899 | CG3168-PF | 1..1899 | 17..1915 | 9495 | 100 | Plus |
| CG3168-RE | 1899 | CG3168-PE | 1..1899 | 17..1915 | 9495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3168-RG | 3762 | CG3168-RG | 316..2214 | 17..1915 | 9495 | 100 | Plus |
| CG3168-RF | 3743 | CG3168-RF | 768..2666 | 17..1915 | 9495 | 100 | Plus |
| CG3168-RE | 3375 | CG3168-RE | 400..2298 | 17..1915 | 9495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6721552..6722692 | 1915..775 | 5705 | 100 | Minus |
| X | 23542271 | X | 6723380..6724100 | 774..54 | 3605 | 100 | Minus |
| X | 23542271 | X | 6724209..6724245 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:50 has no hits.
BS22302.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 16:37:33 Download gff for
BS22302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3168-RB | 264..2160 | 17..1913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:02 Download gff for
BS22302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3168-RE | 400..2296 | 17..1913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:06 Download gff for
BS22302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3168-RE | 400..2296 | 17..1913 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:06 Download gff for
BS22302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6721554..6722692 | 775..1913 | 100 | <- | Minus |
| X | 6723380..6724100 | 54..774 | 100 | <- | Minus |
| X | 6724209..6724245 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:02 Download gff for
BS22302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6615587..6616725 | 775..1913 | 100 | <- | Minus |
| arm_X | 6617413..6618133 | 54..774 | 100 | <- | Minus |
| arm_X | 6618242..6618278 | 17..53 | 100 | | Minus |
BS22302.pep Sequence
Translation from 16 to 1914
> BS22302.pep
MVEGDSAKGKSEFYNVEAGLQPNYNQSAASNQASNHPTGQANAPATGNAT
SHIDNRAIIQPYSLGTGPKQPEYQFAADNRGYEPDSHANGKQQDVERDAP
DGGHGGHGPPGKGGKGGKGRKKSVPLPEPTAPIVANFERAIELCGYGKFH
YILLAICGLVSTSEEMDVISMSFILPSAECDLDLNTETKGWLNSIIFIGM
MVGAYFWGSIADSFGRKKVLIVISFMNAFCIVASSFSQTYSFFMLFRFLN
GAALGGSGPVIWSYFAEFQPKAKRGSMLSFMAAFWTFGNLFVASLAWLII
PRTIGFTTPYFTYNSWRIFLLVCSLPSFLVGFLLFYLPESPKFLLTRGKK
DRALAIFRGIFVTNTKRRPDEYMVYDLEVDEKLLESNGNVKNKYSRMISG
MVDHSRALFKSPILRFTIVSITINFTFHIGYYGLLMWFPELFNRFEEYEK
AFPDQSAGVCAVTDYVVNLAKEQSNNGTCSSDIPQSVFMESLISLASALP
ANLLAILGMDMLGRKFFLIAGTMTAGICSALMYFVRSSVQNLVVSAIFSG
AISAANAALDCLITEVFPTKLRATGVAISMVAARLGGIIGNIVIAQLLDN
YCPSPTFIVSGLLIGGGLMCLLLPNTTRKELN*
BS22302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3168-PG | 632 | CG3168-PG | 1..632 | 1..632 | 3285 | 100 | Plus |
| CG3168-PF | 632 | CG3168-PF | 1..632 | 1..632 | 3285 | 100 | Plus |
| CG3168-PE | 632 | CG3168-PE | 1..632 | 1..632 | 3285 | 100 | Plus |
| CG3168-PD | 632 | CG3168-PD | 1..632 | 1..632 | 3285 | 100 | Plus |
| CG3168-PB | 632 | CG3168-PB | 1..632 | 1..632 | 3285 | 100 | Plus |
