BS22303.complete Sequence
3398 bp assembled on 2011-02-17
GenBank Submission: KX804477
> BS22303.complete
GAAGTTATCAGTCGACATGAGCAACAAGAGCACTCCGGTGCGGCAGCGCA
TCCAGCAGTTCCAGACGCGAGGAGTCCACAAATCCACGCCGGCATCCGAG
ATGCGCAAGAAGGTGCTGATGACGCGGGCGGAGGATCGGGAGCACCGGGA
TCGTCCCGAACAGCTGCTGAACACTGCATTCAGCGGGAGCACGCCACAGC
CGAAGCCCAAGCCCACGGCCCTGAATGCCTGCTACACACCCTCGTCGCTG
TACAGGAATGCGAACTCTACTCCTGGAAGAGCAAAGACGCCCGGCACCGG
GAAATCCAGCTGCAGCAGGACAAAGGAGCGGGACTCTCTGATGGAGTCCT
GCCTCAGCGTGTCCGAGGAGAGCAACATGATTGTGGCGGTGCGAGTGCGG
CCACTGAATGCCCTGGAATGCACACGTGGTCAGGTCACCAATGTGGTCCA
GGTGCACGGAAACAGCAACGAGCTGACTGTCCAAGCGGGCAGCAGTGCTG
ATGCCTCCGCCGGCGTGACGCACTTCTTCAGCTACGACCAGGTCTACTAC
TCGTGCGATCCCGAACGAAAGAACTTCGCCTGCCAGGCCAAAGTCTTTGA
GGGCACAGCGCGTCCCTTGATCGACACTGCCTTCGAGGGCTACAATGCCT
GCTTGTTTGCCTACGGCCAGACGGGCTCGGGCAAATCGTACAGCATGATG
GGCATTGAAGCATTGGATGACGCCGCTCTGGATGGCGGACCGCCGCACGA
TGAGGCGGGCATCATTCCACGCTTCTGCCACGAGCTATTCCGCCGCATAG
AGGCTGTGAAAAGTCAGCAGCAGCTGCAGGTGGAGGTGGAGGTCAGCTAC
TTTGAGATCTACAACGAGAAGATACACGATCTGCTGAGTGTCCAGCATGC
GGCAGCTGCCACCGGGGAATCCACGCCCATCCAGCAGCAACAACAGCAGC
AGCGTCCGGCTCTAAAGGTCAGGGAGCATCCCATCTTCGGGCCCTACGTA
GTGGACTTGAGTGCCCACTCGGTGGACTCGTACTCGGCACTCCGCAACTG
GCTTGCCGTGGGCAACTCCCAGCGGGCCACTGCCTCCACGGCCATGAACG
ACAAGAGCTCGCGCTCACACTCCATCTTCAACATTGTCCTAAACCTCACC
GATCTGAGCAGTGACGATGGCCTGTCCTCGGATACGGACTCGAGCACGGC
CTCCTCCCTGCGGCAGACGCGGCGCAGCAAGATTAGCCTGGTGGACCTGG
CGGGCAGCGAACGCATTAGCGTCTCCGGATCGAACGGCGAGCGGATCCGC
GAGGGCGTCAGCATCAACAAGAGCCTGCTGACGCTGGGGAAAGTAATTGC
TGCTCTCGCCGATTCCCGCAAGGCGATCGCCAATGGACCCCTGGGCTCTG
GGACGCCCAGCACCTTCGTTCCCTATCGCGAGAGCGTGCTCACCTGGCTG
TTGCGGGAAAACCTCGGCGGGAACTCGAAGACGGTCATGTTGGCCACCAT
TTCACCGGCCAGCATCCATGCGGATGAGACCCTAGCCACTTTGCGTTACG
CCTGCAAGGCGCGTTCCATCGTCAACCGGGTGAAGGTAAACGAATCCCCC
CACGACAAGATCATACGGGATCTGCGCGCCGAGGTGGATCGCCTGAAGTC
GCTGAGGAACGAGTACGAGCGCCAGCGGCGCTTGTCCGGCAATAGTAACA
ATCCCGTGCCACGTAAGATCATCATTGAAACCTCCGTGGACGAGACCGAG
GTGGAGGCACTGCGTCAGCAGCTGGCAGAACGGGAAAGGGAGCTGAGTCG
AGCGCAAAAGTCATGGATGGAGAAGCTCAAGGAGGCGGAGGATCAGCGCA
AATCGGAACTTCGTGTCCTGAAACGCCGGGGATTGGCTCTGGAACTAACT
GCTGAGCAGAAGCAGGCCTGTCTGGTTAATTTAACAGCGGATCCCATACT
AAGTGGCACCCTGTTCTATCTGTTGCCCCAAGGACTAGTGCGGATAGGAC
GAGGTCGTCTGCCAGGAGGGAGTTCTAGTTCGCAGCCTGATATTGTACTG
GATGGTCCACTGGTGGCCTTGCAGCACTGCAGCATCGAGCATGAACGTGG
TGGCAAGTTGTATGTCATCCCCGGCAGCGAGGACTTCGAGACCTACGTGA
ACGGAGAACTACTGAAGGATCGTCGCCAGCTGTTTCATGGCGACCGTCTC
GTCATAGGTGGCTCCCACTACTTTCGCATTTCCAATCCCTTCTGCTCGCA
AAGAGGCAAGGCCGATCATCCGGTAGATTTCCAGCTGGCCCATCAGGAGA
TTTTGCAAAAGCAGGAGCAGCAACTTCGCTCCGAATTGGAGGCGGAAAAG
CGAGCCGCTCTCACGAAGATTGAACAGGAGCGGGCGCAGCATGCCCGGGA
CTTTGAGGAGCGTCTGCAGTGCCTCGAACTAGAGCAGTTCAAGTACAAAT
GCAACAGCGAGATGCTGGAGACGGAACGCCAGGCCTTGGCCTTGGCCCAA
CAACAGGAACACACTCCGCTAAGGCATGAAGATGCAGTATCAACTCCAGC
ACAGAAGTCGACTATACTGGAGGACATTCAACGCATCATGCTGAATCCCT
CGGAGGAGAGTCTTCACAAGACCCAGTTGATGGTCAAAGAGGCCACCCAG
CGTTGTCGCCAGTTGGACCTGCCATTGGAGTTCCGGCAAACTCAGACGCC
AGATGAATTTGGTCTCCTGCGCACTGTTATCTTGATTCTGGATAAGCAGC
GGGGATTGAAGGCCGAGTGGCCCACAGCTAGACTGGGTGTGTGGTTGGAT
TTGGTCAGGGATAATGCTGAACAGCAGGAAAAGCTGAACGCTACAACCAT
TTTCCAGAGTGTTGAGGTGGATTGGGAGCCACTGGACGCGGATCTCAATG
AGACACTGAGTGACACACACAACTCCAGTCGCATTGCCCTTAATCTGAGT
GCCATGAAGGATGTTCTGTTGAATAAACCGCTGAAACGCCTGCTCAACGC
ATCCAGCAGCAAGAGCAATACACCGCGACAGACATCCACTCCCTCACCTG
GAAGCCAGCTGGTGCACTTCACCAAACGCCTGCTGACCTACGATCCGGAG
GAGATACCTGAAAGCCAGAGTAGTTTCACAACGCTCGTCCAGCAGGAGCT
GCAAATCATGCAGCGATCCGCCCAGCGTTTACGGCGACACTGCGAGGCTG
CCCTACTCGAGCGTGAAAACCATCAGGACAACGGCGTCCTGGCCGTCAGC
CTGCAGGAGGCTCTGGCACGAATGGACACCGTGCTGAACGGGATGCACAC
TTCGTTGGCGAGAGCGGAGGCCACTGCATGTGTCACCTCGCCGACGAAAA
CACAGAAGGCTGTGCGCTTTCTTATCGATTGAAAGCTTTCTAGACCAT
BS22303.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neb-RA | 3366 | CG10718-PA | 1..3366 | 17..3382 | 16830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neb-RA | 3592 | CG10718-RA | 98..3466 | 14..3382 | 16845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20087646..20089572 | 1456..3382 | 9635 | 100 | Plus |
| 2L | 23513712 | 2L | 20075854..20077297 | 14..1457 | 7220 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6676..6854 | 771..953 | 129 | 56 | Plus |
BS22303.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 16:37:34 Download gff for
BS22303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neb-RA | 101..3465 | 17..3381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:09 Download gff for
BS22303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neb-RA | 101..3465 | 17..3381 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:18 Download gff for
BS22303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neb-RA | 101..3465 | 17..3381 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:18 Download gff for
BS22303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20075857..20077296 | 17..1456 | 100 | -> | Plus |
| 2L | 20087647..20089571 | 1457..3381 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:09 Download gff for
BS22303.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20075857..20077296 | 17..1456 | 100 | -> | Plus |
| arm_2L | 20087647..20089571 | 1457..3381 | 100 | | Plus |
BS22303.pep Sequence
Translation from 16 to 3381
> BS22303.pep
MSNKSTPVRQRIQQFQTRGVHKSTPASEMRKKVLMTRAEDREHRDRPEQL
LNTAFSGSTPQPKPKPTALNACYTPSSLYRNANSTPGRAKTPGTGKSSCS
RTKERDSLMESCLSVSEESNMIVAVRVRPLNALECTRGQVTNVVQVHGNS
NELTVQAGSSADASAGVTHFFSYDQVYYSCDPERKNFACQAKVFEGTARP
LIDTAFEGYNACLFAYGQTGSGKSYSMMGIEALDDAALDGGPPHDEAGII
PRFCHELFRRIEAVKSQQQLQVEVEVSYFEIYNEKIHDLLSVQHAAAATG
ESTPIQQQQQQQRPALKVREHPIFGPYVVDLSAHSVDSYSALRNWLAVGN
SQRATASTAMNDKSSRSHSIFNIVLNLTDLSSDDGLSSDTDSSTASSLRQ
TRRSKISLVDLAGSERISVSGSNGERIREGVSINKSLLTLGKVIAALADS
RKAIANGPLGSGTPSTFVPYRESVLTWLLRENLGGNSKTVMLATISPASI
HADETLATLRYACKARSIVNRVKVNESPHDKIIRDLRAEVDRLKSLRNEY
ERQRRLSGNSNNPVPRKIIIETSVDETEVEALRQQLAERERELSRAQKSW
MEKLKEAEDQRKSELRVLKRRGLALELTAEQKQACLVNLTADPILSGTLF
YLLPQGLVRIGRGRLPGGSSSSQPDIVLDGPLVALQHCSIEHERGGKLYV
IPGSEDFETYVNGELLKDRRQLFHGDRLVIGGSHYFRISNPFCSQRGKAD
HPVDFQLAHQEILQKQEQQLRSELEAEKRAALTKIEQERAQHARDFEERL
QCLELEQFKYKCNSEMLETERQALALAQQQEHTPLRHEDAVSTPAQKSTI
LEDIQRIMLNPSEESLHKTQLMVKEATQRCRQLDLPLEFRQTQTPDEFGL
LRTVILILDKQRGLKAEWPTARLGVWLDLVRDNAEQQEKLNATTIFQSVE
VDWEPLDADLNETLSDTHNSSRIALNLSAMKDVLLNKPLKRLLNASSSKS
NTPRQTSTPSPGSQLVHFTKRLLTYDPEEIPESQSSFTTLVQQELQIMQR
SAQRLRRHCEAALLERENHQDNGVLAVSLQEALARMDTVLNGMHTSLARA
EATACVTSPTKTQKAVRFLID*
BS22303.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neb-PA | 1121 | CG10718-PA | 1..1121 | 1..1121 | 5685 | 100 | Plus |
| Khc-73-PC | 1899 | CG8183-PC | 8..617 | 123..798 | 997 | 37.4 | Plus |
| Khc-73-PF | 1913 | CG8183-PF | 8..617 | 123..798 | 997 | 37.4 | Plus |
| Khc-73-PA | 1921 | CG8183-PA | 8..617 | 123..798 | 997 | 37.4 | Plus |
| Khc-73-PE | 1957 | CG8183-PE | 8..617 | 123..798 | 997 | 37.4 | Plus |
