BS22306.complete Sequence
2879 bp assembled on 2011-02-17
GenBank Submission: KX806414
> BS22306.complete
GAAGTTATCAGTCGACATGCAGTCAATGAAAGCCGATGAACTGCCGGAGA
ATCCGCGCGAGAAGTCCAACATCTTCTCATCTTTGATGTTCTGCTTTGCC
ATGCCCACTTTCTTCAAGGGACGCAAAAAGACACTGGATGAGAATGATTT
GTACCGCGCCTTACAGGAGCACAGATCAGATCACCTGGGCAGCAAGCTGA
GCGCGGCGTGGGAGAAGGAGGTCGAAAAGAAGCGCAAAAAGAAGAAGACC
CCCAGCCTGCTGAAGGCCTCGATGAACGTGTTTGGCTGGCGCCTGGCCGG
TCTAGGCCTGGTCCTCTTCATCTTGGAGATCGGTTTCCGAGTCACCCAGC
CGCTGTTCCTGGGCGGTCTGGTGGCCTACTATGCGGACGCGAGCAACCAG
GAAGGCGATAACCAGACGAAGGCATACCTCTACGCCCTGGGCGTGATCTT
GACAAGCGCCTGCAACGTGCTCTTCATGCATCCCTACATGCTGGGCATGT
TCCACATCGGCATGAAGGCCAGAATAGCCATGACAAGCATGATATATCGG
AAGGCGCTGCGATTGAGTCGAACGGCGCTGGGCGATACCACAATTGGTCA
GGTGGTCAATCTCATCTCGAACGATGTGGGCCGGCTGGACGTTTCGGTCA
TCCACATGAACTATTTATGGCTGGGTCCGGTGGAGATTGGCATTATCACG
TACCTCATGTACAGGGAGATTGGTATCTCCGCCTTCTTCGGCGTGGCGGT
GATGTTGCTGTTTATACCCCTGCAAGCCTATCTGGGCAAGAAGACCTCCG
TGCTGCGATTGAAAACGGCTCTGCGGACGGATGAGCGAGTGCGCATGATG
AACGAGATCATTTCGGGCATCCAGGTGATCAAGATGTATGCGTGGGAAAT
TCCCTTCAGCAAGATGATCAACTATGTGCGCACCAAGGAGATGAACGCCA
TCCGCAATGTGAACTACATCCGAGGCACGCTGCAAAGCTTCATCATGTTC
GTCACGAGGATATCGGTGTTTGTGAGCTTGGTTGGATTCGTGCTGCTTGG
AAAGCTTCTGACCGCCGAGAAGGCCTTCGTGATCACCGCCTACTACAATA
TCCTGCGTAACACCATGACCGTCTACTTCCCCATGGGAATATCCCAGTTT
GCCGAACTATTGGTCTCGATCCGCCGTATCCAGACATTCATGCTGCACGA
GGAGACAAAGGTGCGTGACAAGTCGGAGGACCTGGACGAGCAGAAGCTGG
GCAAGGCGGGTCTAATTGCTGAACCCACAGTGGCCCAGACCACTGGTGTC
CTGAAGCCAAGCAGTCGTCGCACCAGCGAAGCGGAGCACAGTATCGTCAT
AAGCAAGCTAAAGGCCAAATGGGATCAGAAGAACACGGACAACACGTTGG
ATAACATTTCGCTAAAGTTCAAGCCGCGTCAACTTGTGGCCGTCATTGGA
CCAGTGGGCTCTGGAAAATCAAGCTTGATTCAGGCTGTGCTGGGAGAACT
GAATCCGGATTCTGGTTCGGTCAAAGTCAACGGAACTCTCTCGTACGCCT
CCCAGGAGCCGTGGCTCTTCACCGGCACTGTTCGCCAGAACATCCTCTTC
GGACTGCCCATGGATAAGCATCGCTACCGCACTGTGGTCAAAAGGTGTGC
CCTGGAGCGGGACTTCGAGCTGTTGCCCTATGCTGACAAGACTATTGTGG
GTGAGAGAGGAGCATCTCTCTCCGGAGGACAGAAGGCGCGTATAAGTTTG
GCCAGAGCTGTTTACCGGAAGGCTGACATCTACCTGTTGGACGATCCCCT
TAGTGCCGTGGATACCCATGTCGGACGTCATCTGTTCGATCAGTGTATGC
GTGGATTCCTGCGCGAGGAAATCGTACTGCTTGTGACCCATCAACTGCAG
TTCCTAGAACAGGCCGACGTTATTGTGATCATGGACAAGGGCAAGATCAG
CGCTATGGGCACCTACGAGTCCATGGCCAAGAGCGGTTTGGACTTCGCCC
AAATGCTGACGGATCCCAGCAAGAAGGATGAGGGTGCCGGTGATGCCCCG
GACAAGAAGAGCCTCTCGAGGCAGAACAGTAAATTGCGCGACCGACACGG
TAGCATCTCCTCCATGGAATCTGCTGCCGAATCCTTGGCGGCGGAGTCAC
CCATGCAGACGCAGGAAGGTCGCGTCGAGGGGCGCATAGGAATGAAGCTC
TACAAAAAGTACTTTGGAGCGAATGGCTACGGACTGTTTATCGTATTTGC
GTTCTTCTGCATTGGTGCCCAGGTGCTGGCCTCTGGTGGTGATATCTTCT
TGTCCTACTGGGTGAACAAAAATGGTGAAGCTGAGCGTGATACCTTTATG
GCCAGATTGAGACGCGCCTTCCCCGAAACCCGCATCAATGCCGATACCGA
TCCTGTTGACATCTACTACTTCACCGGCATCAATGTGTCTGTGATCATCT
TCTCGCTGGTGCGGAGCATGCTCTTCTTCTACCTGGCAATGCGCAGTTCG
ACGACCCTGCACAACACCATGTTCCAAGGTGTGACCCGAGCGGCGATGCA
TTTCTTCAACACCAATCCCTCCGGACGCATCCTCAATCGCTTCTCCAAGG
ACTTGGGTCAAGTGGACGAGATTCTTCCCTCCGTGATGATGGACGTGATG
CAGATCTTCCTCGCAATCGTGGGCATCGTAGTCGTCCTATGTATCATTAA
CGTTTGGTACATCCTCGCCACGGTGTTCCTTGTGATCGTTTTCTACCTCC
TGCGCGTCTTCTATCTGAGCACATCCCGTGACGTGAAGCGACTCGAAGCT
GTCAGTTTATTAAATCAATATATTTTATATCAACAGCACGCTCCCCCATT
TACTCCCACTTGAAAGCTTTCTAGACCAT
BS22306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4562-RD | 2847 | CG4562-PD | 1..2847 | 17..2863 | 14235 | 100 | Plus |
| CG4562-RB | 2847 | CG4562-PB | 1..2847 | 17..2863 | 14235 | 100 | Plus |
| CG4562-RE | 4227 | CG4562-PE | 1..2788 | 17..2804 | 13940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4562-RD | 4764 | CG4562-RD | 388..3234 | 17..2863 | 14235 | 100 | Plus |
| CG4562-RB | 4539 | CG4562-RB | 163..3009 | 17..2863 | 14235 | 100 | Plus |
| CG4562-RE | 4825 | CG4562-RE | 146..2933 | 17..2804 | 13940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19869409..19871003 | 2311..717 | 7975 | 100 | Minus |
| 3R | 32079331 | 3R | 19868853..19869349 | 2806..2310 | 2485 | 100 | Minus |
| 3R | 32079331 | 3R | 19871572..19871770 | 537..339 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 19871332..19871513 | 718..537 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 19871842..19872004 | 339..177 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 19005417..19005910 | 1445..1941 | 680 | 76.3 | Plus |
| 3R | 32079331 | 3R | 11573061..11573522 | 1551..2012 | 540 | 74.5 | Plus |
| 2L | 23513712 | 2L | 8358291..8358721 | 1971..1541 | 475 | 74 | Minus |
| 3R | 32079331 | 3R | 19874201..19874287 | 179..93 | 435 | 100 | Minus |
| 2L | 23513712 | 2L | 20931773..20932309 | 1969..1430 | 415 | 72.2 | Minus |
| 3R | 32079331 | 3R | 19874345..19874421 | 93..17 | 385 | 100 | Minus |
| 2R | 25286936 | 2R | 9392529..9392830 | 1544..1845 | 370 | 74.8 | Plus |
| 3R | 32079331 | 3R | 19868744..19868802 | 2863..2805 | 295 | 100 | Minus |
| 2L | 23513712 | 2L | 8357497..8357654 | 2665..2508 | 280 | 78.5 | Minus |
| 3R | 32079331 | 3R | 11574033..11574233 | 2462..2662 | 270 | 75.6 | Plus |
| 2L | 23513712 | 2L | 18999905..19000167 | 1709..1971 | 265 | 73.4 | Plus |
| 2L | 23513712 | 2L | 19004792..19004878 | 802..888 | 255 | 86.2 | Plus |
| 2L | 23513712 | 2L | 19006481..19006636 | 2507..2662 | 255 | 77.6 | Plus |
| 3R | 32079331 | 3R | 11572367..11572462 | 818..913 | 225 | 82.3 | Plus |
| 3R | 32079331 | 3R | 29160971..29161022 | 846..897 | 200 | 92.3 | Plus |
| 3R | 32079331 | 3R | 11571632..11571717 | 545..630 | 190 | 81.4 | Plus |
| 3R | 32079331 | 3R | 11569757..11569802 | 16..61 | 185 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:43:20 has no hits.
BS22306.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 16:37:36 Download gff for
BS22306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4562-RB | 144..2989 | 17..2862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:28 Download gff for
BS22306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4562-RB | 163..3008 | 17..2862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:03 Download gff for
BS22306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4562-RB | 163..3008 | 17..2862 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:03 Download gff for
BS22306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19871842..19872001 | 180..339 | 100 | <- | Minus |
| 3R | 19874201..19874286 | 94..179 | 100 | <- | Minus |
| 3R | 19874345..19874421 | 17..93 | 100 | | Minus |
| 3R | 19868745..19868802 | 2805..2862 | 100 | <- | Minus |
| 3R | 19868855..19869348 | 2311..2804 | 100 | <- | Minus |
| 3R | 19869410..19871001 | 719..2310 | 100 | <- | Minus |
| 3R | 19871332..19871513 | 537..718 | 100 | <- | Minus |
| 3R | 19871573..19871769 | 340..536 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:28 Download gff for
BS22306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15694467..15694524 | 2805..2862 | 100 | <- | Minus |
| arm_3R | 15694577..15695070 | 2311..2804 | 100 | <- | Minus |
| arm_3R | 15695132..15696723 | 719..2310 | 100 | <- | Minus |
| arm_3R | 15697054..15697235 | 537..718 | 100 | <- | Minus |
| arm_3R | 15697295..15697491 | 340..536 | 100 | <- | Minus |
| arm_3R | 15697564..15697723 | 180..339 | 100 | <- | Minus |
| arm_3R | 15699923..15700008 | 94..179 | 100 | <- | Minus |
| arm_3R | 15700067..15700143 | 17..93 | 100 | | Minus |
BS22306.pep Sequence
Translation from 16 to 2862
> BS22306.pep
MQSMKADELPENPREKSNIFSSLMFCFAMPTFFKGRKKTLDENDLYRALQ
EHRSDHLGSKLSAAWEKEVEKKRKKKKTPSLLKASMNVFGWRLAGLGLVL
FILEIGFRVTQPLFLGGLVAYYADASNQEGDNQTKAYLYALGVILTSACN
VLFMHPYMLGMFHIGMKARIAMTSMIYRKALRLSRTALGDTTIGQVVNLI
SNDVGRLDVSVIHMNYLWLGPVEIGIITYLMYREIGISAFFGVAVMLLFI
PLQAYLGKKTSVLRLKTALRTDERVRMMNEIISGIQVIKMYAWEIPFSKM
INYVRTKEMNAIRNVNYIRGTLQSFIMFVTRISVFVSLVGFVLLGKLLTA
EKAFVITAYYNILRNTMTVYFPMGISQFAELLVSIRRIQTFMLHEETKVR
DKSEDLDEQKLGKAGLIAEPTVAQTTGVLKPSSRRTSEAEHSIVISKLKA
KWDQKNTDNTLDNISLKFKPRQLVAVIGPVGSGKSSLIQAVLGELNPDSG
SVKVNGTLSYASQEPWLFTGTVRQNILFGLPMDKHRYRTVVKRCALERDF
ELLPYADKTIVGERGASLSGGQKARISLARAVYRKADIYLLDDPLSAVDT
HVGRHLFDQCMRGFLREEIVLLVTHQLQFLEQADVIVIMDKGKISAMGTY
ESMAKSGLDFAQMLTDPSKKDEGAGDAPDKKSLSRQNSKLRDRHGSISSM
ESAAESLAAESPMQTQEGRVEGRIGMKLYKKYFGANGYGLFIVFAFFCIG
AQVLASGGDIFLSYWVNKNGEAERDTFMARLRRAFPETRINADTDPVDIY
YFTGINVSVIIFSLVRSMLFFYLAMRSSTTLHNTMFQGVTRAAMHFFNTN
PSGRILNRFSKDLGQVDEILPSVMMDVMQIFLAIVGIVVVLCIINVWYIL
ATVFLVIVFYLLRVFYLSTSRDVKRLEAVSLLNQYILYQQHAPPFTPT*
BS22306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4562-PD | 948 | CG4562-PD | 1..948 | 1..948 | 4800 | 100 | Plus |
| CG4562-PB | 948 | CG4562-PB | 1..948 | 1..948 | 4800 | 100 | Plus |
| CG4562-PE | 1408 | CG4562-PE | 1..930 | 1..930 | 4697 | 99.9 | Plus |
| CG4562-PC | 1362 | CG4562-PC | 1..930 | 1..930 | 4697 | 99.9 | Plus |
| CG4562-PA | 1362 | CG4562-PA | 1..930 | 1..930 | 4697 | 99.9 | Plus |
| CG4562-PE | 1408 | CG4562-PE | 821..1294 | 162..649 | 213 | 20.5 | Plus |
| CG4562-PC | 1362 | CG4562-PC | 821..1294 | 162..649 | 213 | 20.5 | Plus |
