BS22307.complete Sequence
707 bp assembled on 2011-01-27
GenBank Submission: KX800341
> BS22307.complete
GAAGTTATCAGTCGACATGCGACCCTGGATCTTGACATCCTTCACCGGGG
TGGGGACCAACTTTTGCTCCGGGGTAGGAATGGCTGTGGCGGCGGCCACG
GCCAGAGCCAGGAATACGAACCTCGAACGCGACACCATGTATTTGCTTGT
GAACTTCATCGTTGCGCTGGCCGTGCTGCAGGTGCAAGCCGGCTCATCCT
ACATTCCGGACTCGGATCGCAACACACGCACCCTGCAGAACGATCTGCAG
GTGGAGCGGGATGGCAAGTATCGGTATGCCTACGAGACCTCCAATGGCAT
TTCCGCATCGCAGGAGGGATTGGGTGGCGTGGCCGTACAGGGCGGCAGTA
GTTACACATCACCCGAGGGCGAAGTAATTAGTGTGAACTATGTGGCCGAT
GAGTTTGGCTATCATCCCGTGGGCGCACATATACCCCAGGTGCCGGACTA
CATACTGCGCTCCCTGGAGTACATTAGGACGCATCCCTACCAGATCAAGG
ACTACTACACCGGGGAGCTGAAGACCGTGGAGCACGATGCAGCCGCCTTT
AATGTGTACACACGCAACATTCAGGATCATACGATCCCCCAATCCCGACC
GAGCACCACGCCCAAGACCATTTACCTCACCCATCCGCCCACGACCACGT
CGCGACCTCTGCGCCAAAGACGAGCTCTTCCGACGCACTGAAAGCTTTCT
AGACCAT
BS22307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pcp-RA | 555 | CG3440-PA | 1..555 | 137..691 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pcp-RA | 718 | CG3440-RA | 19..588 | 122..691 | 2850 | 100 | Plus |
| Jon99Fii-RA | 913 | CG2229-RA | 34..138 | 121..17 | 525 | 100 | Minus |
| Jon99Fi-RA | 933 | CG18030-RA | 36..138 | 119..17 | 485 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7021798..7022340 | 149..691 | 2715 | 100 | Plus |
| 3R | 32079331 | 3R | 30487791..30487895 | 17..121 | 525 | 100 | Plus |
| 3R | 32079331 | 3R | 30488998..30489100 | 119..17 | 485 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:36:18 has no hits.
BS22307.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:50 Download gff for
BS22307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcp-RA | 13..587 | 116..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:22 Download gff for
BS22307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcp-RA | 13..587 | 116..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:38 Download gff for
BS22307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcp-RA | 13..587 | 116..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:38 Download gff for
BS22307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7021700..7021726 | 122..148 | 100 | -> | Plus |
| 2L | 7021798..7022339 | 149..690 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:22 Download gff for
BS22307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7021700..7021726 | 122..148 | 100 | -> | Plus |
| arm_2L | 7021798..7022339 | 149..690 | 100 | | Plus |
BS22307.pep Sequence
Translation from 16 to 690
> BS22307.pep
MRPWILTSFTGVGTNFCSGVGMAVAAATARARNTNLERDTMYLLVNFIVA
LAVLQVQAGSSYIPDSDRNTRTLQNDLQVERDGKYRYAYETSNGISASQE
GLGGVAVQGGSSYTSPEGEVISVNYVADEFGYHPVGAHIPQVPDYILRSL
EYIRTHPYQIKDYYTGELKTVEHDAAAFNVYTRNIQDHTIPQSRPSTTPK
TIYLTHPPTTTSRPLRQRRALPTH*
BS22307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pcp-PA | 184 | CG3440-PA | 1..184 | 41..224 | 964 | 100 | Plus |
| Cpr65Ec-PA | 127 | CG8634-PA | 5..118 | 47..159 | 264 | 44.8 | Plus |
| Cpr67Fa2-PA | 134 | CG18349-PA | 6..124 | 48..164 | 258 | 47.1 | Plus |
| Cpr67Fa1-PA | 134 | CG7941-PA | 6..124 | 48..164 | 257 | 46.3 | Plus |
| Cpr65Eb-PA | 179 | CG8638-PA | 4..127 | 45..163 | 254 | 43.2 | Plus |
