BS22309.complete Sequence
914 bp assembled on 2011-01-27
GenBank Submission: KX801253
> BS22309.complete
GAAGTTATCAGTCGACATGTCATCGCACGGCCTTGCTTACACAACAAGAA
TTGAAAGAAAGTCTTATAGAGAACTACAAATCAATAGAGATCAATACTTT
GTAACTGCGCCAAATGAAGAAGATTTGGTTATGAGTTTATCTCCAAAGGA
CACACTTATACATACTGCCATTTCCCAGCACCATCAAGTGGATACTTCTA
CTAAATTAAATACAAACGAAACATCGACACAAAATACCGTATCTACAGCA
GCCGCGGCAGCGGTTGCACATCACCACCACAACCTTTCTAGTATTCACCA
CCTCCAAAACCTGCATAGTCAGCATCAAAGTACTTTATTTAATAGTAATC
ACTCAACACCCTTTAGCGTGACCGATATCTTAAGTCCAATTGAAGAATCG
TATCGCAAACTGGAACTGAACGGAAATCCACCATCTCCGTTTCGATCAAA
CTCTAGTAGCAGCAGTATTAATTCTCCTGGAACATTAACTACATCAACTA
TGGCGAATCCGTACGCTATGGGAACCTTATATCACAGCCCAGGTGTACAG
ACCTATTGCGGACCTACCGATAACCTATCTCTGGCTGGTCACTACACTGA
CATGAGAAATTCTGCATCGTGGTACGGATCAACAGCTAACGACCCAAGAT
TTGCAATTTCACGCCTAATGAGTTCATCAGCCAGTGGAACAATGAGTCAT
ATGGGAAACATGAGTGGACTAGCAGCTTGCAGTGTAAGCGATTCAAAACC
GCTACAGTTTCCTTTAGCACAAAGAAGAAAGCGAAGAGTTTTGTTTACGC
AAGCCCAGGTTGGTACTTACATCCTTAGTTTGCTACTTAAAAAAAAAACA
CAAATATTTACCGAATGGAAAGAAGTCAACTTGCTACAGGCAAAATAAAA
GCTTTCTAGACCAT
BS22309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scro-RB | 882 | CG17594-PB | 1..882 | 17..898 | 4410 | 100 | Plus |
| scro-RC | 1320 | CG17594-PC | 1..794 | 17..810 | 3970 | 100 | Plus |
| scro-RA | 1407 | CG17594-PA | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scro-RB | 1246 | CG17594-RB | 310..1193 | 16..899 | 4420 | 100 | Plus |
| scro-RC | 1874 | CG17594-RC | 310..1104 | 16..810 | 3975 | 100 | Plus |
| scro-RA | 1961 | CG17594-RA | 310..1104 | 16..810 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24725864..24726292 | 16..444 | 2145 | 100 | Plus |
| 3L | 28110227 | 3L | 24734036..24734278 | 657..899 | 1215 | 100 | Plus |
| 3L | 28110227 | 3L | 24728296..24728508 | 444..656 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:36:45 has no hits.
BS22309.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:51 Download gff for
BS22309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 127..1006 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:31 Download gff for
BS22309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 311..1190 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:46 Download gff for
BS22309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 311..1190 | 17..896 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:46 Download gff for
BS22309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24734036..24734275 | 657..896 | 100 | | Plus |
| 3L | 24725865..24726292 | 17..444 | 100 | -> | Plus |
| 3L | 24728297..24728508 | 445..656 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:31 Download gff for
BS22309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 209197..209624 | 17..444 | 100 | -> | Plus |
| 3LHet | 211629..211840 | 445..656 | 100 | -> | Plus |
| 3LHet | 217368..217607 | 657..896 | 100 | | Plus |
BS22309.pep Sequence
Translation from 16 to 897
> BS22309.pep
MSSHGLAYTTRIERKSYRELQINRDQYFVTAPNEEDLVMSLSPKDTLIHT
AISQHHQVDTSTKLNTNETSTQNTVSTAAAAAVAHHHHNLSSIHHLQNLH
SQHQSTLFNSNHSTPFSVTDILSPIEESYRKLELNGNPPSPFRSNSSSSS
INSPGTLTTSTMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSA
SWYGSTANDPRFAISRLMSSSASGTMSHMGNMSGLAACSVSDSKPLQFPL
AQRRKRRVLFTQAQVGTYILSLLLKKKTQIFTEWKEVNLLQAK*
BS22309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scro-PB | 293 | CG17594-PB | 1..293 | 1..293 | 1515 | 100 | Plus |
| scro-PC | 439 | CG17594-PC | 1..265 | 1..265 | 1375 | 100 | Plus |
| scro-PA | 468 | CG17594-PA | 1..265 | 1..265 | 1375 | 100 | Plus |
| scro-PF | 307 | CG17594-PF | 1..104 | 162..265 | 546 | 100 | Plus |
