BS22314.complete Sequence
1127 bp assembled on 2011-01-27
GenBank Submission: KX804505
> BS22314.complete
GAAGTTATCAGTCGACATGGACACAAAGCTCGCCTTCATTTCCGGACTCA
TCATGATCCCCACGATATCAGGCGCCCTGACCTTCAATGCAACTCTAATA
TGTAGCTTGGTGGTCAACGGAACCAAGATGAACGATCCTCGGGCGTGCAA
CGCGTGGATTCAGTGCATCGATGGGAGCCCTGTGAGTGGTAGCTGTGCGA
CTGGACTCTTCTACGACCGGGAGAGCCAGAAATGCCTGAGTTCCAGTAGT
ATCAAGTGTCTGTCCAGTGATCCGTGCGCTGCTCTGCCCACCGGATTCGC
GGCTGATCCGTACTCCTGCAATGGTTATTACTATTGCAAGGATGGCAAGG
GGACGCACGGAGTGTGCAACACTGGGATGAATTTCAATTCGGGAACGCAG
GACTGCATCCGCGATTTTCCGTGCTCGAATAAAATGGACCCGGATAGCTA
TTGCAACATCTTGCCGGATGGGGTCTTCGTCAAGGACACGGACAACTGCA
ATGGCTATCAGTTGTGCTGGGATGGCCAGGTGATCAATGGAACCTGTCCG
GGCACCTTCTACTTCAAGGCCTCCACGGCCCAGTGCGATTATCCGCAGAA
TGTGGAGTGTGACTTCGTCCCAGTGCCAGATATTAGCAAGAAGGGTGTAT
GTCCAGAGACGGGTGGATTTATATCGGATAACAAGACCTGCAATGGCTAC
TACTACTGCAAGGATTTGGGCAATGGAGAGTTCTCGCTGGAGCATGGCGT
CTGCTCCGATGGAAGATTTTTCCTGGCCACCGATGGCGGAGCCTGTGTCC
CGCGATCCAAGGTGAAATGCGGCTACGATCGATGCGTGGGCTTGGGCAAT
TCCACCATTCAGCTGGCCAACGAGTCGGATGATGGCTGCAGGGGCTACTC
GATCTGCCAGGATGGCATCGTCATTGGCCAAGGAACTTGTCCGCAGGACG
AGTACTTCGACGAAATAACCCAACGGTGCACCACCCAGGTCATATCATAT
ACCGCCTGTCAGATATCGGAGGCAACCACCGGGTCCCAAGTTCCAAGTGG
CACCACCACCACCACCAGCAGCACCATCACTAGCACCACCATTGCGGTCC
CGGTGTCGTGAAAGCTTTCTAGACCAT
BS22314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6996-RC | 1095 | CG6996-PC | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG6996-RB | 1095 | CG6996-PB | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6996-RC | 1828 | CG6996-RC | 87..1186 | 12..1111 | 5485 | 99.9 | Plus |
| CG6996-RB | 1377 | CG6996-RB | 87..1186 | 12..1111 | 5485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20207867..20208958 | 20..1111 | 5460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:37:17 has no hits.
BS22314.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:52 Download gff for
BS22314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6996-RB | 99..1192 | 17..1110 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:43 Download gff for
BS22314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6996-RB | 92..1185 | 17..1110 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:59 Download gff for
BS22314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6996-RB | 92..1185 | 17..1110 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:59 Download gff for
BS22314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20207864..20208957 | 17..1110 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:43 Download gff for
BS22314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20200964..20202057 | 17..1110 | 99 | | Plus |
BS22314.pep Sequence
Translation from 16 to 1110
> BS22314.pep
MDTKLAFISGLIMIPTISGALTFNATLICSLVVNGTKMNDPRACNAWIQC
IDGSPVSGSCATGLFYDRESQKCLSSSSIKCLSSDPCAALPTGFAADPYS
CNGYYYCKDGKGTHGVCNTGMNFNSGTQDCIRDFPCSNKMDPDSYCNILP
DGVFVKDTDNCNGYQLCWDGQVINGTCPGTFYFKASTAQCDYPQNVECDF
VPVPDISKKGVCPETGGFISDNKTCNGYYYCKDLGNGEFSLEHGVCSDGR
FFLATDGGACVPRSKVKCGYDRCVGLGNSTIQLANESDDGCRGYSICQDG
IVIGQGTCPQDEYFDEITQRCTTQVISYTACQISEATTGSQVPSGTTTTT
SSTITSTTIAVPVS*
BS22314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6996-PC | 364 | CG6996-PC | 1..364 | 1..364 | 2016 | 100 | Plus |
| CG6996-PB | 364 | CG6996-PB | 1..364 | 1..364 | 2016 | 100 | Plus |
| CG17145-PB | 334 | CG17145-PB | 3..333 | 4..332 | 468 | 34.6 | Plus |
| CG17145-PA | 334 | CG17145-PA | 3..333 | 4..332 | 468 | 34.6 | Plus |
| CG5883-PA | 339 | CG5883-PA | 34..337 | 28..331 | 425 | 32.4 | Plus |
| CG17145-PB | 334 | CG17145-PB | 41..290 | 97..346 | 175 | 27.7 | Plus |
| CG17145-PA | 334 | CG17145-PA | 41..290 | 97..346 | 175 | 27.7 | Plus |
