BS22322.complete Sequence
2987 bp assembled on 2011-02-17
GenBank Submission: KX804833
> BS22322.complete
GAAGTTATCAGTCGACATGCTGGCCATAGTAATCCTGATGACTGGAGGTG
TTGGGGTATGCATAAACCCCAATCGTTCTGACCAGAAAACTGCCTTCAAA
GTGGTGGCAACATCGGTGAAAGGTGGACGCTCGTACAGCAAGGACAGCCA
CAAGAGTTCGCACACCGACTTGAGTTTAATGTGCAATGCCTCATCGTCCC
GGCCATCGAACTCTGCGTCTGGAAGCGGATCGCCGAAGCTATTGGCAAAC
ACTCAATTGCGAGCTGCCAAAAAGCGCGATGTGCGCAATCTGAGCATATC
GCCAACCGATCTGGGTCCGCCACCAAAAACCCAACAGACAACCAAGGGAC
AATCGACGCGCAGCAAATCATCGGCCACGCCCACGCCAACGCCCACATCC
ATACATAAACGTTTAAATGGCACTTTGGCCAGCACGGCAGCAATTGCAAC
ACCCATCAAAGGAGTGGCCACCAAATCCGGAGCCACAAACAAGCTGCAAC
AATCGGCAAAAACTAAATCAACCGCGAGTATCAAAAGTCCAGCAATTGTC
GGCGTTTCCGAGGAATCCCTGCGCTCTGGCGTGGATCAAACCGAACTTCA
GGAGCTGAACAATGGGCAATCTGCTACCGGTTGTCCGACGCCGCCGATGG
CGCGGGACTCAAAGCGTACGTCCATTGGAAATGAGTTACCCTGTGAGACG
GAGGCCAAGTTGAAGAGATGCGAGGACCAGCAGGATCCACAAGCATCCAC
GACGGCATCACCCCTACCGATGATCAATCCACAGGAACAAGAAGCCAGTG
GCCAGGTCAAAGAAGCAACAATCACCACTGCAAATGAGCCAAACGCCTTG
TCCTTGCCCGACGAAATCAGCAATTCGGTCAGCTCGACGACGATGCTGGC
CACGCCCCGCGTAGACATAGCCGCCCAGTATCCCGTCCTGAAACCATTCA
CAGAGAACGGAGAGCTGGACTGTGCCCGACTGGCCAAGTTCTTCCAGGAC
ACCCAGTTCGAGAGGAAGGAGGAGCAACGCCAGATTCTGGGCCTCTCCGT
AATGGTGCAGTTCATGTCCAAAGAGCTGGATGCGGTTGCCTGCAAGGAGA
ACAAACATCAATGCGCCCGGACCAAGGGAACGCTAGAGAAGACTATATTG
CTGCTACAGCATACGCAAAAGGATTGCGAGCGACTACGCGAGGATTTGGA
GGACAAGGGCCTGGAGTGGATTCAGCGGCAGCAGGAGAAGGAATATCTGC
ATCGCACTGAACTGAAGCAAGCTGAAGAGAAATTAATGGAGGTGCAATTG
CGTGCCAAGTTAAAGTTCTGCGAATTAGAGTCCCAACTGCGTGCCAAGGA
CGAGGAGAGCAAACAGGCGCAGGAGGCCTACAGAATGGAGGTCTCCCACA
AACTTGCACTGAAGCAGGAACATCTGCGCACTGCCGAGCAGAAAATCCAG
GAACTGCAGACACGTCTTCAGCAGGTGGAGACCGAGGAGCAGGGGCACCG
CGAGGAGCTGATCCGCAAGGAGAACATTCACACCGCCCGGCTGGCCGAGG
CCAATCAGCGGGAGCAGGATCTGATCGACCGGGTCAAGAGCCTGACCAAG
GAGCTGAACACCCTGAAGGCCAACAAGGAGCATAACGAACGCGATTTGAG
GGATCGGCTGGCGCTGTCCCAGGACGAAATCTCTGTGCTGCGCACATCCT
CACAGCGCCGCAGCCCCTGCACCAGTTTGCCGGACAACGCGTCCGCCGAA
CTCAACCGCTTGACCAGCGAGGCAGACAGCTTGCGCTGTGTGCTTGAGCT
CAAGCAGGCGGAGATTTCCGCCCTTAGCAAGGCCAAGGCGGATCTGATTC
ATGAAAGCGAAGAGCGGCTGAAACTGAGTAACCGCGTCGCCCTTTTGGAG
GCCCAAAACGAAATGCTGCGCACCGAACTGGAGGCCAAGACCGAAAAGGA
GAAGGAAATCCAGCAAAAGATGGAGGAACTTCAGAAGGCCTACAAATACG
AGAGCATTAAACGCACGCGGCTGACGTATGACAAAGAGGAGCTACAGTAC
CACCTTAAGCAGAGATCATTGCAGCTCCAGTCGGCTGAGTCAAAGTTGCA
AGATCTTTCCACTGGTTCCCACGATAACAGCCTATCTAGCCACAGCCGAT
GCAGCCTGGGTCGCAGTGGCCTGGAGATCGCCGTGACCACCTCCTCGCCC
ACTTCCCCAGTGATGAAGGGAATGATTGAACGGAATGATTCCGTCAGCTG
GACGCTAGAGATCGAAGATGAGTCGTTCAAGGGTAACACTTCAAAGATTG
TGCGCAGGGCGGGGTCACTGCGAAGCAACAACGAGCGGTGCCCCATCCAG
CGGCGACAGACATTGACAAGCAATGGACACTCCAATGGATCGGCCACAAA
TGGCGGCTCTTCCCCCGCTCATCCTAATCCCCTTAGCCAGAGCATGTCGG
CCACAGCCCTTCTGAGAAGCAGCAGTAATTCCGGGGAGTCAGAGGGTCGT
CCTTTGTCCCGGGCTCGCTCAAAATCGATGTGCATCAAAGCGTCCGCCAC
CAGTTCGGCGGTGTGCGAATCGTCTGGCCAAAGGAAGAAACCACAAGACG
AGTTGAGTCTGGCCGACTGGCCCGAGGATATTCCCCTGTGCTCCAGTTCA
CCACAAGCGCCGGGAATAGAGATGCGTCCGCGCAGCTCCACCATGAAGCT
AATGTCCAGCGAGGCAAAGAAGTTCCAGGAAATCCAGGAGTCCGCCGGCG
AGGCCATGGTCTCCGGTGCTAACTCGGAGGACGAAAGCTGTTCGGCCTCA
TCCGAGGACATAATGCGCAGCTCTTCCGCCTCCAGCACCGCATCGGGTGG
ATCCCTATCCAAGAGGCCAAAGCAACCACCATCCCGCATGTCCATCGAGG
AGGCTCTGCCCTGCACCCCCATGGAGGTAAGCTGGTCAGAAGACGCTGCC
GATGCCAACGGACTGGCATGAAAGCTTTCTAGACCAT
BS22322.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-RD | 2955 | CG9660-PD | 1..2955 | 17..2971 | 14775 | 100 | Plus |
| toc-RA | 6489 | CG9660-PA | 3641..6489 | 123..2971 | 14245 | 100 | Plus |
| toc-RH | 2982 | CG9660-PH | 128..2838 | 261..2971 | 13555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-RD | 3410 | CG9660-RD | 138..3092 | 17..2971 | 14775 | 100 | Plus |
| toc-RA | 8297 | CG9660-RA | 4080..6928 | 123..2971 | 14245 | 100 | Plus |
| toc-RH | 4787 | CG9660-RH | 708..3418 | 261..2971 | 13555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3069714..3070731 | 2971..1954 | 5090 | 100 | Minus |
| 2L | 23513712 | 2L | 3070822..3071506 | 1954..1270 | 3425 | 100 | Minus |
| 2L | 23513712 | 2L | 3080994..3081269 | 838..563 | 1380 | 100 | Minus |
| 2L | 23513712 | 2L | 3080651..3080889 | 1075..837 | 1195 | 100 | Minus |
| 2L | 23513712 | 2L | 3071569..3071766 | 1271..1074 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 3094217..3094375 | 563..405 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 3097918..3098065 | 408..261 | 725 | 99.3 | Minus |
| 2L | 23513712 | 2L | 3108724..3108862 | 261..123 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 3112093..3112199 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 607..710 | 415..518 | 116 | 61.1 | Plus |
| Penelope | 804 | Penelope 804bp Derived from AF418572 (AF418572) (Rel. 70, Last updated, Version 3). | 162..265 | 415..518 | 116 | 61.1 | Plus |
BS22322.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 16:37:36 Download gff for
BS22322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RD | 138..3091 | 17..2970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:54 Download gff for
BS22322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RD | 138..3091 | 17..2970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:34 Download gff for
BS22322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toc-RD | 138..3091 | 17..2970 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:34 Download gff for
BS22322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3097922..3098065 | 261..404 | 100 | <- | Minus |
| 2L | 3108725..3108861 | 124..260 | 100 | <- | Minus |
| 2L | 3112093..3112199 | 17..123 | 100 | | Minus |
| 2L | 3069715..3070731 | 1954..2970 | 100 | <- | Minus |
| 2L | 3070823..3071504 | 1272..1953 | 100 | <- | Minus |
| 2L | 3071569..3071764 | 1076..1271 | 100 | <- | Minus |
| 2L | 3080651..3080887 | 839..1075 | 100 | <- | Minus |
| 2L | 3080994..3081268 | 564..838 | 100 | <- | Minus |
| 2L | 3094217..3094375 | 405..563 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:54 Download gff for
BS22322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3069715..3070731 | 1954..2970 | 100 | <- | Minus |
| arm_2L | 3070823..3071504 | 1272..1953 | 100 | <- | Minus |
| arm_2L | 3071569..3071764 | 1076..1271 | 100 | <- | Minus |
| arm_2L | 3080651..3080887 | 839..1075 | 100 | <- | Minus |
| arm_2L | 3080994..3081268 | 564..838 | 100 | <- | Minus |
| arm_2L | 3094217..3094375 | 405..563 | 100 | <- | Minus |
| arm_2L | 3097922..3098065 | 261..404 | 100 | <- | Minus |
| arm_2L | 3108725..3108861 | 124..260 | 100 | <- | Minus |
| arm_2L | 3112093..3112199 | 17..123 | 100 | | Minus |
BS22322.pep Sequence
Translation from 16 to 2970
> BS22322.pep
MLAIVILMTGGVGVCINPNRSDQKTAFKVVATSVKGGRSYSKDSHKSSHT
DLSLMCNASSSRPSNSASGSGSPKLLANTQLRAAKKRDVRNLSISPTDLG
PPPKTQQTTKGQSTRSKSSATPTPTPTSIHKRLNGTLASTAAIATPIKGV
ATKSGATNKLQQSAKTKSTASIKSPAIVGVSEESLRSGVDQTELQELNNG
QSATGCPTPPMARDSKRTSIGNELPCETEAKLKRCEDQQDPQASTTASPL
PMINPQEQEASGQVKEATITTANEPNALSLPDEISNSVSSTTMLATPRVD
IAAQYPVLKPFTENGELDCARLAKFFQDTQFERKEEQRQILGLSVMVQFM
SKELDAVACKENKHQCARTKGTLEKTILLLQHTQKDCERLREDLEDKGLE
WIQRQQEKEYLHRTELKQAEEKLMEVQLRAKLKFCELESQLRAKDEESKQ
AQEAYRMEVSHKLALKQEHLRTAEQKIQELQTRLQQVETEEQGHREELIR
KENIHTARLAEANQREQDLIDRVKSLTKELNTLKANKEHNERDLRDRLAL
SQDEISVLRTSSQRRSPCTSLPDNASAELNRLTSEADSLRCVLELKQAEI
SALSKAKADLIHESEERLKLSNRVALLEAQNEMLRTELEAKTEKEKEIQQ
KMEELQKAYKYESIKRTRLTYDKEELQYHLKQRSLQLQSAESKLQDLSTG
SHDNSLSSHSRCSLGRSGLEIAVTTSSPTSPVMKGMIERNDSVSWTLEIE
DESFKGNTSKIVRRAGSLRSNNERCPIQRRQTLTSNGHSNGSATNGGSSP
AHPNPLSQSMSATALLRSSSNSGESEGRPLSRARSKSMCIKASATSSAVC
ESSGQRKKPQDELSLADWPEDIPLCSSSPQAPGIEMRPRSSTMKLMSSEA
KKFQEIQESAGEAMVSGANSEDESCSASSEDIMRSSSASSTASGGSLSKR
PKQPPSRMSIEEALPCTPMEVSWSEDAADANGLA*
BS22322.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toc-PD | 984 | CG9660-PD | 1..984 | 1..984 | 4926 | 100 | Plus |
| toc-PA | 2162 | CG9660-PA | 1196..2162 | 18..984 | 4753 | 98.3 | Plus |
| toc-PI | 936 | CG9660-PI | 1..936 | 1..984 | 4527 | 93 | Plus |
| toc-PH | 993 | CG9660-PH | 44..945 | 83..984 | 4516 | 100 | Plus |
| toc-PE | 945 | CG9660-PE | 44..945 | 83..984 | 4516 | 100 | Plus |
