BS22331.complete Sequence
1439 bp assembled on 2011-01-27
GenBank Submission: KX804520
> BS22331.complete
GAAGTTATCAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGC
ATTGGCAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGTCCA
ACACCACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGCAGG
TGCAAATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGTGTC
CAGATATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGCACC
GAGTCATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGACTC
AGCCGCCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGGTCA
GCGACGAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGACCG
CCCAGCAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCTCGA
CGACTGCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCTCCG
CTGTGGAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGTCGG
CAGCCGCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACATTTA
TTGCAAAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGCGCT
GCCTGGCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAATCTT
GTTTTTCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACTGAC
AAAGGGAGACCAGTACGGCATCATCGACGCCCTCATCTACTGCAGGACCC
ACTACAGCATAGCCAGGGAGGGGGATACCGCCTCATCCAGTATGAGCGCC
ACCTACCCGTACAGCGCCCAGTTCGGCTCACCCCACAACGACTCCTCGAG
CCCGCACTCGGACCCTAGTCGGAGCATTGTTCCTACGGGCATCTTTGTGC
CCGCGTCCCACGTAATCAACGGACTGCCGCAGCCAGCTCGTCAAAAGGGC
AGGCCCCGCAAGCGCAAGCCCAAGGACATCGAGGCGTTCACCGCTAACAT
AGATCTCAACACTGAGTACGTGGACTTTGGCCGAGGCTCGCACCTAAGCT
CCTCGTCGCGCACCAAACGAATGCGAACCTCGTTTAAGCATCACCAGCTG
CGTACCATGAAGTCCTACTTTGCCATTAATCATAACCCTGATGCAAAGGA
TCTAAAACAATTGTCACAGAAAACTGGTTTACCAAAGAGGGTCCTACAGG
TCTGGTTTCAAAATGCAAGGGCCAAATGGCGCCGCATGATGATGAAGCAG
GATGGCAGCGGCCTGCTGGAGAAGGGCGAAGGCGCTCTGGACCTCGACAG
CATCTCCGTGCACAGTCCTACGTCGTTTATATTGGGAGGACCGAACAGCA
CACCGCCACTTAACTTGGACTAAAAGCTTTCTAGACCAT
BS22331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ap-RC | 1407 | CG8376-PC | 1..1407 | 17..1423 | 7035 | 100 | Plus |
| ap-RA | 1410 | CG8376-PA | 1..1410 | 17..1423 | 6970 | 99.8 | Plus |
| ap-RE | 741 | CG8376-PE | 1..741 | 683..1423 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ap-RC | 3089 | CG8376-RC | 972..2380 | 15..1423 | 7045 | 100 | Plus |
| ap-RA | 4114 | CG8376-RA | 972..2383 | 15..1423 | 6980 | 99.8 | Plus |
| ap-RE | 2149 | CG8376-RE | 73..1440 | 56..1423 | 6840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5708611..5708869 | 1052..794 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 5717281..5717500 | 482..263 | 1100 | 100 | Minus |
| 2R | 25286936 | 2R | 5717555..5717764 | 264..55 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 5708181..5708381 | 1251..1051 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 5708925..5709105 | 796..616 | 890 | 99.4 | Minus |
| 2R | 25286936 | 2R | 5707933..5708108 | 1423..1248 | 880 | 100 | Minus |
| 2R | 25286936 | 2R | 5716649..5716790 | 621..480 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 5725821..5725861 | 55..15 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:39:11 has no hits.
BS22331.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:54 Download gff for
BS22331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RC | 972..2376 | 17..1421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:37 Download gff for
BS22331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RC | 974..2378 | 17..1421 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:44 Download gff for
BS22331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ap-RC | 974..2378 | 17..1421 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:44 Download gff for
BS22331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5708611..5708867 | 796..1052 | 100 | <- | Minus |
| 2R | 5708926..5709099 | 622..795 | 100 | <- | Minus |
| 2R | 5716649..5716788 | 482..621 | 100 | <- | Minus |
| 2R | 5717282..5717498 | 265..481 | 100 | <- | Minus |
| 2R | 5717555..5717763 | 56..264 | 100 | <- | Minus |
| 2R | 5725821..5725859 | 17..55 | 100 | | Minus |
| 2R | 5707935..5708106 | 1250..1421 | 100 | <- | Minus |
| 2R | 5708183..5708379 | 1053..1249 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:37 Download gff for
BS22331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1605060..1605268 | 56..264 | 100 | <- | Minus |
| arm_2R | 1613326..1613364 | 17..55 | 100 | | Minus |
| arm_2R | 1595440..1595611 | 1250..1421 | 100 | <- | Minus |
| arm_2R | 1595688..1595884 | 1053..1249 | 100 | <- | Minus |
| arm_2R | 1596116..1596372 | 796..1052 | 100 | <- | Minus |
| arm_2R | 1596431..1596604 | 622..795 | 100 | <- | Minus |
| arm_2R | 1604154..1604293 | 482..621 | 100 | <- | Minus |
| arm_2R | 1604787..1605003 | 265..481 | 100 | <- | Minus |
BS22331.pep Sequence
Translation from 16 to 1422
> BS22331.pep
MGVCTEERPVMHWQSARFLGPGAREKSPTPPVAHQGSNQCGSAAGANNNH
PLFRACSSSSCPDICDHSTKPFGNAYGTESFRSYETADRATFEDSAAKFS
ISRSRTDCTEVSDETTSGISFKTEPFGPPSSPESTSDSKITRNLDDCSGC
GRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKNDY
YSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQY
GIIDALIYCRTHYSIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSDP
SRSIVPTGIFVPASHVINGLPQPARQKGRPRKRKPKDIEAFTANIDLNTE
YVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLS
QKTGLPKRVLQVWFQNARAKWRRMMMKQDGSGLLEKGEGALDLDSISVHS
PTSFILGGPNSTPPLNLD*
BS22331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ap-PC | 468 | CG8376-PC | 1..468 | 1..468 | 2525 | 100 | Plus |
| ap-PA | 469 | CG8376-PA | 1..469 | 1..468 | 2513 | 99.8 | Plus |
| ap-PE | 246 | CG8376-PE | 1..246 | 223..468 | 1311 | 100 | Plus |
| ap-PB | 246 | CG8376-PB | 1..246 | 223..468 | 1311 | 100 | Plus |
| tup-PB | 465 | CG10619-PB | 49..331 | 142..451 | 391 | 31.5 | Plus |
