BS22334.complete Sequence
3863 bp assembled on 2011-02-17
GenBank Submission: KX801828
> BS22334.complete
GAAGTTATCAGTCGACATGGGTTTATTACAAAAGTTGCGGAGGCAAATGT
TGACAAGCGTTAACCCCAGAAAGGTTGAAGGTCGAAAAACTATAAAGTTC
AATCTCGTTGCGAAAAGCAAAAGTCACTCGGGCATATCAGCACCCATCGG
CCTTGGCCCCCAGCTACCACCCCTTCCCCTCGGCGGCGGTTTTGTTAAGT
TGCGTCATGTAGCCAAGGAGGAGGATACCAGTAGCAGCAGCAACACATCC
TCCGCCAAGGAATCGCCAGATAAGAAGGATCTTCGCCAGGAGCAGGCAGA
AGCTTCGGGAGACTCATCGCACCCAACGGCTCTGCCACAGTTTCTTCAAG
GCGTCCAACGATCATCAACCGAGGTCATGGGCCCCGATCAGCGGTCTTTG
GTGATTTCGAAGACCGGCTCCATTGCGGAGCGTTTGGCGGCACTCCACAA
AAGTGGCGAGGACGACTGGAAGAAGCGCATCTCGAAGCGCGACGAAGTCG
ACGATGTGCACCGTGAAAACTTCGTAAACGAATCGCTATCTTTGGCCCAC
TCGCTGTCGGACAAACCACTGCCCCCATCACCTTTGATACCCACCAGCTT
GGAGGGCGGCAAGGTCTCCGATCGTTTGAGCAAACTCAAGTGCAACTCGG
AGAACTGGAAGCAGCGCATAGAGCAAACCGATGCCAAGAAATTCACAGTC
GCCGGTCGACTGCAAAAGAAGGCCCAATCCCCCGTGGAGCTTCAATTCGA
GCGTTCTGCCAATGATGCGGCCAAAAAGTGTCCCATGCTGGAGGTGCGCA
GCGCCAATCAGCCGCAGCTTGGGCTGGCCAAGAGCCCCTCCATGATGGTC
ACCTCTAGCACCAGCACCAATAGCACCAGCAAGTCCGCACTCCGCAGCCT
GAGCGTCAATCCCGAGGAGGAGGGACCCACCAGCCTGAGTCGCTCCAACA
GCAGCAGTTCGGAGTCCGATGGAGAGCGCAAATCCCCCCAGAATGCCAAG
CAAAACAAGGAGCTGGCCAACAACAAGAGTGCTGCAGCACCCACCAATGT
GGGAGCCAGGATTCAGGTGCCCCGGCTGGACGACAAGGAAACTTTCGAGA
ACTTCTTCTCCTCCAAGCCGAAGAAGGAGGAGAACGTTCAGCTGGAGATC
AGCGCTTTCGATGACATCAAGCCCACTGAGCGCTTGGTAAGCAAGCGACA
CGTACAGGGTCCCAAAGGTCGACGGGCTGCACGCAATCCTCTCAAGAGTT
TAGCTGCTCGTGAGGACATTAGCTCCGAGTACACCGAAATGAGGTCGGGC
ATAGCCGAGCGAGAATTACGGCGCCTAAAGTTGGAGTCATATGGTCATAA
TGCCAACTTGGCTGCAGAGGCCATAGCCGGATTAGCCTCCGTCGAGGACT
TCAAGTCGGTGGCACTGCGCTCCTCGTCGATTCCACTGCAGCAAATGTGG
CTACCCCACAAGCCAGTGATGTTACTCCATGTTAAGGGGCGCACACATGT
CCAAACCCGACTGGTGGAACCCGTGCATACCTCCCTGAACCGTGGTGATT
GCTTCATCCTGGTGGCCGGATCGCAGCTTTTCCGCTACGTTGGATCCTTT
GCAAACGTAATCGAGATCTCCCGGAGCAAGAAGATCTGCGCTGCCATAGT
GGAAAACAAGGATCTCGGTTGCACCGCCACCCAGGAGGTGATCCTCACGG
ATGGCAAGTATTTGAAGGAGCGCCAGTGGCGTCAGTTCTGGCAGCTTTTG
GGCAAAAAAGAGGATGATCAATCGGATATAGCTGAATGCGGTCATGCCGA
TGAAGACGACGTGTTCGAGAGCAGCCTGATCGAGACTAACAAGATCTACG
AGTACCAGGATGAGGCGCTCATTCCGTTGGAGAAATTCTGGGGCTGCATC
CCCAAGGTGGACATGTTGGACACGCGTAAAGTTTTGGTCTTTGACTTTGG
CAGCGAGCTGTATGTGTGGAATGGCAAGAATGCCCCTTCCGATGCCAAGC
GAGCTGCCATGAGATTGGCCCAGGAACACTTTGGTGCTGAGAATTCGGCG
GACTATGCCGACTGTTACTTGAATCCCCTGAACTATGTCGCCATAGTGGG
TCGTCGTGAGAACACCAAGTATGCCAAGAGGTGCGCACAGCGTCCAGAAT
GGTGTGTTCTCGGCAAGATCACCCAGAACATGGAGACGGTGCTGTTCAAG
GAGAAGTTCAGTGATTGGCCAGAGATAGAACGCGAGGATCTGGAGAAGGA
TTACCTATCAAACGGAGTGCATATGGTGCGTGCTTTAAACGGCACCGCTT
TGCATAAGGGAGAACCCTACCAGGAACCAAATCTGGTGCTCGAGCAGGCC
AACTTGGGGCGTGGCAATTTCTACTACGACACGGACACCATGCGGCACTT
CGATGTGATTACCAAGTCAACGGACAAATGGCAGATCCACGAGTTCAACT
TTGATGCGGCGAATAATCGCGATGACTACGGTCACTTCTACTCGGCGGAG
AGCTATATAGTGCGCTGGATCTACCAGATTTCGGTCACAGTTCGCGAACT
CAGTGGCAAGGTGTCGAACAGAAGCACAGTGGGTCGAGACAGGTGTGTCT
ATTTCACCTGGCAAGGACAGGACTCAAGTGCCAACGAGAAGGGTGCAGCT
GCTTTGCTGACCGTAGAGTTGGACAAGGAGAAAGGCGCACAGATGCGGGT
GTCGCAAGGAGATGAGTGCACAGCCTTCGTCCGCCTGTTCCGGCAAATGT
GGCAACATCGTGGACGCAAGGAGCAATGTCTGGAGAGGCACAGCGAGTGG
AGGCTCTACCAACTGCAGGGCAACGTCAGCGAGGAGACCATCATCAAGGA
AGTCGTCTGCCAGTCCAGCCATTTGCGATCCCGCAGCTCCATGCTGTTAA
TTCACGGCAGTCAGGGAAATGTGATTGTCTGGCATGGATCGAAGAGTGCT
CCTCATACGCGTAATGTGGCTGTAGGAGTTGCTCAGGATCTGATCAAGAC
GGTGCCTAAAGATCTCTTCAGCGCCGAAACTGCCAACCTAACTGAGGTGG
AGGAGGGTTCCGACGACGATCAGTGCAAGAAGGCCCTGGGATTGAAGGAT
GAAAGAAATGAATATGGCAGCCTGCTTAAGTCCACCAAGTCGTTCGATTA
CCAAATAAGGATCTTCAACTTCTCCAGCACTCAGGGTGTTTTCAAAGCCC
TCGAACTGAGCGATCCGCTGCGCTGCCAGGATCTGCATAGTCCGTATCCC
TTCAGCCAGTCGCAGCTGTACAATGCAAGGCAGCCGACTATCTTTTTGCT
GGACGACGGCGATGAGTTGTGGCTCTGGATGGGATGGTGGCCTCTGGAAG
ATGTGAAGATAAACACCGATGAGCGAAGCAGTCCCACCAACGAAAATCGC
GCTGGAGTAAATCGCTGGATCTCAGAGAGACGTGCTGCCCTCGAGACAGC
CGTTGACTATTGGCGTGCCAAGCACGGCGAGAACGAGAATGAACCCTTCC
ATGGCATCAAAGGCCAGGTTGTGTGGGCAGGCCTGGAGCCACTGGCCTTT
AAGGCGCTGTTTCCCGACTGGACAGAACGTCCGGATGTAAGAGAAATCAA
CGAAGAAGATGGGCGAACTGATGCTTCCATATCGATCGCCACAATGCTGG
CACAAATGACGCAGACCGAGTATCCCCTGGAAGTCCTGAAAGCCCGACCG
CTGCCCGAAGGTGTGGAGCCCACCCGCCTGGAGGTCTACCTTAATGCGGA
GGACTTCCAGGCGGCACTGGGATGCAGCCGGGCGGAATTCGAGCAGCTGC
CCATCTGGAAACAGACCAAGCTGAAGAAGGAGCGAGGGCTGTTTTAGAAG
CTTTCTAGACCAT
BS22334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45186-RAE | 13581 | CG45186-PAE | 9834..13581 | 100..3847 | 18725 | 100 | Plus |
| CG45186-RX | 4545 | CG45186-PX | 798..4545 | 100..3847 | 18725 | 100 | Plus |
| CG45186-RW | 9123 | CG45186-PW | 5376..9123 | 100..3847 | 18725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45186-RZ | 4447 | CG45186-RZ | 118..3866 | 99..3847 | 18730 | 100 | Plus |
| CG45186-RAE | 14937 | CG45186-RE | 10609..14356 | 100..3847 | 18725 | 100 | Plus |
| CG45186-RY | 4738 | CG45186-RY | 410..4157 | 100..3847 | 18725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2496018..2498036 | 1341..3359 | 10095 | 100 | Plus |
| 3L | 28110227 | 3L | 2495217..2495729 | 670..1182 | 2550 | 99.8 | Plus |
| 3L | 28110227 | 3L | 2484564..2484839 | 100..375 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 2498099..2498347 | 3360..3608 | 1245 | 100 | Plus |
| 3L | 28110227 | 3L | 2498406..2498645 | 3608..3847 | 1200 | 100 | Plus |
| 3L | 28110227 | 3L | 2485071..2485229 | 372..530 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 2495800..2495958 | 1182..1340 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 2495011..2495152 | 530..671 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 2480744..2480812 | 31..99 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:47:31 has no hits.
BS22334.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 16:37:38 Download gff for
BS22334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33232-RA | 1..3819 | 30..3847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:36 Download gff for
BS22334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33232-RA | 1..3819 | 30..3847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:34 Download gff for
BS22334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45186-RZ | 115..3866 | 94..3847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:34 Download gff for
BS22334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2484564..2484837 | 100..373 | 100 | -> | Plus |
| 3L | 2480742..2480812 | 28..99 | 98 | -> | Plus |
| 3L | 2485073..2485228 | 374..529 | 100 | -> | Plus |
| 3L | 2495011..2495152 | 530..671 | 100 | -> | Plus |
| 3L | 2495219..2495729 | 672..1182 | 99 | -> | Plus |
| 3L | 2495801..2495958 | 1183..1340 | 100 | -> | Plus |
| 3L | 2496018..2498036 | 1341..3359 | 100 | -> | Plus |
| 3L | 2498099..2498346 | 3360..3607 | 100 | -> | Plus |
| 3L | 2498406..2498645 | 3608..3847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:36 Download gff for
BS22334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2495801..2495958 | 1183..1340 | 100 | -> | Plus |
| arm_3L | 2484564..2484837 | 100..373 | 100 | -> | Plus |
| arm_3L | 2485073..2485228 | 374..529 | 100 | -> | Plus |
| arm_3L | 2495011..2495152 | 530..671 | 100 | -> | Plus |
| arm_3L | 2480742..2480812 | 28..99 | 98 | -> | Plus |
| arm_3L | 2495219..2495729 | 672..1182 | 99 | -> | Plus |
| arm_3L | 2496018..2498036 | 1341..3359 | 100 | -> | Plus |
| arm_3L | 2498099..2498346 | 3360..3607 | 100 | -> | Plus |
| arm_3L | 2498406..2498645 | 3608..3847 | 100 | | Plus |
BS22334.pep Sequence
Translation from 16 to 3846
> BS22334.pep
MGLLQKLRRQMLTSVNPRKVEGRKTIKFNLVAKSKSHSGISAPIGLGPQL
PPLPLGGGFVKLRHVAKEEDTSSSSNTSSAKESPDKKDLRQEQAEASGDS
SHPTALPQFLQGVQRSSTEVMGPDQRSLVISKTGSIAERLAALHKSGEDD
WKKRISKRDEVDDVHRENFVNESLSLAHSLSDKPLPPSPLIPTSLEGGKV
SDRLSKLKCNSENWKQRIEQTDAKKFTVAGRLQKKAQSPVELQFERSAND
AAKKCPMLEVRSANQPQLGLAKSPSMMVTSSTSTNSTSKSALRSLSVNPE
EEGPTSLSRSNSSSSESDGERKSPQNAKQNKELANNKSAAAPTNVGARIQ
VPRLDDKETFENFFSSKPKKEENVQLEISAFDDIKPTERLVSKRHVQGPK
GRRAARNPLKSLAAREDISSEYTEMRSGIAERELRRLKLESYGHNANLAA
EAIAGLASVEDFKSVALRSSSIPLQQMWLPHKPVMLLHVKGRTHVQTRLV
EPVHTSLNRGDCFILVAGSQLFRYVGSFANVIEISRSKKICAAIVENKDL
GCTATQEVILTDGKYLKERQWRQFWQLLGKKEDDQSDIAECGHADEDDVF
ESSLIETNKIYEYQDEALIPLEKFWGCIPKVDMLDTRKVLVFDFGSELYV
WNGKNAPSDAKRAAMRLAQEHFGAENSADYADCYLNPLNYVAIVGRRENT
KYAKRCAQRPEWCVLGKITQNMETVLFKEKFSDWPEIEREDLEKDYLSNG
VHMVRALNGTALHKGEPYQEPNLVLEQANLGRGNFYYDTDTMRHFDVITK
STDKWQIHEFNFDAANNRDDYGHFYSAESYIVRWIYQISVTVRELSGKVS
NRSTVGRDRCVYFTWQGQDSSANEKGAAALLTVELDKEKGAQMRVSQGDE
CTAFVRLFRQMWQHRGRKEQCLERHSEWRLYQLQGNVSEETIIKEVVCQS
SHLRSRSSMLLIHGSQGNVIVWHGSKSAPHTRNVAVGVAQDLIKTVPKDL
FSAETANLTEVEEGSDDDQCKKALGLKDERNEYGSLLKSTKSFDYQIRIF
NFSSTQGVFKALELSDPLRCQDLHSPYPFSQSQLYNARQPTIFLLDDGDE
LWLWMGWWPLEDVKINTDERSSPTNENRAGVNRWISERRAALETAVDYWR
AKHGENENEPFHGIKGQVVWAGLEPLAFKALFPDWTERPDVREINEEDGR
TDASISIATMLAQMTQTEYPLEVLKARPLPEGVEPTRLEVYLNAEDFQAA
LGCSRAEFEQLPIWKQTKLKKERGLF*
BS22334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45186-PAE | 4526 | CG45186-PAE | 3279..4526 | 29..1276 | 6498 | 100 | Plus |
| CG45186-PX | 1514 | CG45186-PX | 267..1514 | 29..1276 | 6498 | 100 | Plus |
| CG45186-PW | 3040 | CG45186-PW | 1793..3040 | 29..1276 | 6498 | 100 | Plus |
| CG45186-PZ | 1156 | CG45186-PZ | 1..1156 | 121..1276 | 6036 | 100 | Plus |
| CG45186-PY | 1156 | CG45186-PY | 1..1156 | 121..1276 | 6036 | 100 | Plus |
