BS22338.complete Sequence
1556 bp assembled on 2011-02-17
GenBank Submission: KX800301
> BS22338.complete
GAAGTTATCAGTCGACATGCCACCCTTTGAAGAGGGTGAATCCAAGCCAG
AGGAGCAGATACCTCTAAAGCCGCCCCGACGCCACAAGAAGATGAAGTCA
GCGGACCAAGAGGCCGCCCAAACGCCGGCGGAGGATCACGAGGAGGAGCA
ATTGCTGCCGGGCAGCGGGACGAGCAATCTGCGTTATGCCCGGGCCAATT
TGAGCCAGAGCAGCCTGATGCTGAGCCACCAGCAGGGCTCCTTCGAATCG
TCAACCGAACGAACGGCGAGCAGTGAGACCCTGGATGTAATGCCGATATC
GAGGCGCTACCAGGTGCATCCACAGCCGAACCGCTTGGGGATTCGGCAGC
CAGCCTCGGCCTTGGCGAGCGCTCTGCATGCCACTGCCAGATTGGCGGCC
AGTGTGGATGCCTATACGGCGGCGGCTACAGCCACAGCGGCAACCGGTGA
CTACGGCGATTATATGCGCCCGCAACCGAACCTCGGTCACGCCCACCAAC
TGCCCCTCACCCAGACAACCCAGACAGCCCAGCCCCTGCACCACCAGCTG
CCCGCTCACCAGCTGGGCAATCTGAGAGCGAGCAATTTTGTGGGGTCGTC
GCGGTATCTCTATCACAGCCAGTTTAATTCGAATTCGCCGCAAACGAGAC
GCTTCACTGCGCAGCGAGACGGGTCGCCAGCATATGCGGCTTCAGTGGCG
GCAGCTTCAGCGGCGGCCGCAGCTTCAGCAGTAGCACCGATAGCGCCACT
AGCACCACTAGCCTCCATAGCATCGCCCCCATTTGCGGCCCAGCCGCCGC
CCTTTCAGTTGCGCACCTACCAACAGAATCAATCCTACCGCTTTCAGCCG
CGCGGACACCATCGCACCGCCAGCAGCAGCATGTCGCAATCCGGCGAGGA
TCTCCACTCGCCCACCTACCTGTCCTGGCGGAAGCTCCAGCTTAGTCGGG
CCAAGCTAAAGGCATCCAGCAAGACGTCCGCCCTGCTCTCCGGATTCGCC
ATGGTGGCGATGGTGGAGGTGCAACTGGATCACGATACGAATGTACCACC
GGGCATGCTGATAGCCTTCGCCATCTGCACCACCCTCCTGGTGGCGGTGC
ACATGCTGGCCCTGATGATCAGCACCTGTATCCTGCCAAATATTGAGACG
GTGTGTAATTTGCATAGTATTTCCCTGGTCCACGAATCGCCACACGAGCG
TCTCCATTGGTACATTGAAACGGCGTGGGCATTCTCCACGCTGCTGGGAC
TCATACTCTTTCTACTGGAGATAGCCATCCTGTGCTGGGTGAAATTCTAT
GACCTAAGTCCGCCGGCGGCTTGGTCAGCGTGTGTGGTCCTCATACCGGT
GATGATCATCTTTATGGCCTTCGCCATTCACTTCTATCGCTCCCTGGTGT
CGCACAAATATGAGGTGACAGTCTCGGGCATTCGTGAGCTGGAGATGCTC
AAGGAGCAGATGGAGCAGGATCATTTGGAGCATCACAATAACATACGAAA
TAATGGCATGAACTATGGCGCATCCGGGGACATTGTCTAGAAGCTTTCTA
GACCAT
BS22338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-F-RG | 1524 | CG11430-PG | 1..1524 | 17..1540 | 7590 | 99.9 | Plus |
| olf186-F-RE | 1524 | CG11430-PE | 1..1524 | 17..1540 | 7590 | 99.9 | Plus |
| olf186-F-RF | 1056 | CG11430-PF | 362..1056 | 846..1540 | 3445 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-F-RG | 4582 | CG11430-RG | 2270..3794 | 16..1540 | 7595 | 99.9 | Plus |
| olf186-F-RE | 3581 | CG11430-RE | 1567..3091 | 16..1540 | 7595 | 99.9 | Plus |
| olf186-F-RF | 2407 | CG11430-RF | 925..1619 | 846..1540 | 3445 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17856810..17857800 | 16..1006 | 4940 | 99.9 | Plus |
| 2R | 25286936 | 2R | 17859257..17859794 | 1003..1540 | 2675 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-27 13:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1063..1163 | 686..786 | 136 | 59.4 | Plus |
BS22338.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 16:37:38 Download gff for
BS22338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RE | 1307..2830 | 17..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:44 Download gff for
BS22338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RE | 1568..3091 | 17..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:51 Download gff for
BS22338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RE | 1568..3091 | 17..1540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:51 Download gff for
BS22338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17856811..17857797 | 17..1003 | 99 | -> | Plus |
| 2R | 17859258..17859794 | 1004..1540 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:44 Download gff for
BS22338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13744316..13745302 | 17..1003 | 99 | -> | Plus |
| arm_2R | 13746763..13747299 | 1004..1540 | 99 | | Plus |
BS22338.pep Sequence
Translation from 16 to 1539
> BS22338.pep
MPPFEEGESKPEEQIPLKPPRRHKKMKSADQEAAQTPAEDHEEEQLLPGS
GTSNLRYARANLSQSSLMLSHQQGSFESSTERTASSETLDVMPISRRYQV
HPQPNRLGIRQPASALASALHATARLAASVDAYTAAATATAATGDYGDYM
RPQPNLGHAHQLPLTQTTQTAQPLHHQLPAHQLGNLRASNFVGSSRYLYH
SQFNSNSPQTRRFTAQRDGSPAYAASVAAASAAAAASAVAPIAPLAPLAS
IASPPFAAQPPPFQLRTYQQNQSYRFQPRGHHRTASSSMSQSGEDLHSPT
YLSWRKLQLSRAKLKASSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIA
FAICTTLLVAVHMLALMISTCILPNIETVCNLHSISLVHESPHERLHWYI
ETAWAFSTLLGLILFLLEIAILCWVKFYDLSPPAAWSACVVLIPVMIIFM
AFAIHFYRSLVSHKYEVTVSGIRELEMLKEQMEQDHLEHHNNIRNNGMNY
GASGDIV*
BS22338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-F-PG | 507 | CG11430-PG | 1..507 | 1..507 | 2615 | 100 | Plus |
| olf186-F-PE | 507 | CG11430-PE | 1..507 | 1..507 | 2615 | 100 | Plus |
| olf186-F-PF | 351 | CG11430-PF | 108..351 | 256..507 | 1208 | 94 | Plus |
| olf186-F-PA | 351 | CG11430-PA | 108..351 | 256..507 | 1208 | 94 | Plus |
| olf186-F-PB | 351 | CG11430-PB | 108..351 | 256..507 | 1208 | 94 | Plus |
