BS22345.complete Sequence
1151 bp assembled on 2011-02-02
GenBank Submission: KX800714
> BS22345.complete
GAAGTTATCAGTCGACATGGTGCACGACAATCCAATTCTCTGGGACTCCC
GTCTCCCGAATTTCAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAG
CACATAGGCCGCGAGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTT
CAAGTCCTTGAGGGAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAA
TGGGCAATGGCTTCAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTC
CTGCGCGATGTCATCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCT
AAGCCTGACAACCTATGGCCATATTAACAATAACAACAACAACAACAACA
ACAGTAACAGCTTGGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCC
AATTCCTTTAACGAGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTC
GCTCAATGTAAGCGACGATCACTACTATTGCGACTACTATGTGAAGCCGG
AGCTGGATCTCTCGGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGT
AGCTCCGGCGGCGGGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGA
CAGTCGGGTGAGCTCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCT
ATGAAGACATGGACGACAGCTCGATACGCAGCGGGGACGAAGATATCGCC
CACGCATCCGACGTAGTGGAGGAGTTGGATGCCATCGATGCAGATTTCCC
TTATCCTCTGATTCTGGATTCCAACTCACGCGGTAGCCCCAATGTTGGTG
TGGACGATGTGGTCATGTCCCGCAAGCTTCGCCGTAACGTCGATCAAGAT
GTTTTGGAGGAAGGAAACGGTCACGGCGATGCGGTTATCGATGGTGACGA
CTACGAAGAACAAATGCTGCAACAGCACCGCCATCTCCGGCAGCAACAGG
GCGTCGCAAGCGGAGGGTTGGATCTGCCGCCCCCACAAACTGTACGTGAG
GTTTTGAACTCCAAGTTCTGCGGCTTTATTTCAGCCAAGCTAAACAGCAT
GGAGGACTCGGACGCGGACAATTTAATGAATCGCATTCTTCTCTTACTGG
TTCAAGTGCAGCAGTGCGAAGGGTCCACGAAATAGAAGCTTTCTAGACCA
T
BS22345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes2-RC | 1119 | CG11100-PC | 1..1119 | 17..1135 | 5595 | 100 | Plus |
| Mes2-RB | 1314 | CG11100-PB | 196..1314 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes2-RC | 2208 | CG11100-RC | 232..1351 | 17..1136 | 5600 | 100 | Plus |
| Mes2-RB | 2302 | CG11100-RB | 326..1445 | 17..1136 | 5600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22950532..22951391 | 277..1136 | 4300 | 100 | Plus |
| 3L | 28110227 | 3L | 22946311..22946571 | 17..277 | 1305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:54:05 has no hits.
BS22345.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:13 Download gff for
BS22345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RC | 232..1344 | 17..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:56 Download gff for
BS22345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RB | 326..1438 | 17..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:02 Download gff for
BS22345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RB | 326..1438 | 17..1129 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:02 Download gff for
BS22345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22946311..22946570 | 17..276 | 100 | -> | Plus |
| 3L | 22950532..22951384 | 277..1129 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:56 Download gff for
BS22345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22939411..22939670 | 17..276 | 100 | -> | Plus |
| arm_3L | 22943632..22944484 | 277..1129 | 100 | | Plus |
BS22345.pep Sequence
Translation from 16 to 1134
> BS22345.pep
MVHDNPILWDSRLPNFKGAEEEKNRAWEHIGREFNAPGRRVARAFKSLRE
SYRRELAHVKLMGNGFKPKWSLYEAMDFLRDVIRERKGASHATDLSLTTY
GHINNNNNNNNNSNSLAAGGKAMTLKLSNSFNESASVLNLSKCSSLNVSD
DHYYCDYYVKPELDLSVGGGAGSSTSGSSSGGGPLPLPAHQAHNDSRVSS
TRNEQRAQHHSYEDMDDSSIRSGDEDIAHASDVVEELDAIDADFPYPLIL
DSNSRGSPNVGVDDVVMSRKLRRNVDQDVLEEGNGHGDAVIDGDDYEEQM
LQQHRHLRQQQGVASGGLDLPPPQTVREVLNSKFCGFISAKLNSMEDSDA
DNLMNRILLLLVQVQQCEGSTK*
BS22345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes2-PC | 372 | CG11100-PC | 1..372 | 1..372 | 1948 | 100 | Plus |
| Mes2-PB | 437 | CG11100-PB | 66..437 | 1..372 | 1948 | 100 | Plus |
| CG12768-PD | 429 | CG12768-PD | 16..143 | 1..117 | 277 | 47.7 | Plus |
| CG12768-PC | 429 | CG12768-PC | 16..143 | 1..117 | 277 | 47.7 | Plus |
| CG12768-PB | 429 | CG12768-PB | 16..143 | 1..117 | 277 | 47.7 | Plus |
