Clone BS22346 Report

Search the DGRC for BS22346

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:223
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG1092-RB
Protein status:BS22346.pep: full length peptide match
Sequenced Size:980

Clone Sequence Records

BS22346.complete Sequence

980 bp assembled on 2011-01-27

GenBank Submission: KX802501

> BS22346.complete
GAAGTTATCAGTCGACATGCCGCAAATGGGCGATCTTATGCAGTTGCTGA
CCGAGCTGCAGAACGATCCAGAGCCATTCGAGGCTAAGCAGAAGACGCTG
GACTTCTTCATCTCCTGCAACGTGCACCACGCGCTGGAAGACTGCTATCG
TGAGACCTATGAGTATTTCAAGCCACTTTTCGGGTATATAGTTACAAAAA
ACATGCTCAATGGAGAATCCCACGAGCTGGATGACTTTCTGGGCATTTTG
GACCGCTTCGTCGTCAGGTTTCAGAAGGACAGAGAGTCGAATCCCATTCT
CAGCAAGCTGGCCACGTATAAGCAGAAATTTAAAACGCCGCGAGTCTACT
TCCATGCTAGAGACCTGAGCCGGGAGTACAAGGACCTGCGGATCTACCGG
GAGAGCTACGAACACAACGTTCGCAATCTGGAGCAGCACAGAAAACTGAA
TTCAACATACGAATTGGGGGTTCAGCGCACCATGCTGGATTGGAGCATGT
ACCTCTTTCAGAGCCGCAACAAGCCCATGTCCTACTTCTACTCCACGTTT
ACGGTCCATTTGTACATGATGCTTTTTAATAGTCTGGAGCGTCAGCGTGA
TTTCACGCGGTTTCGCGAAGATGTGGAGTGTTTAAGGCTGCCGCAGTTCG
TTAATGTTCTGGATGAGGCCAGAATGCTGGCTGTGATCTACTTAAAGAGC
TTCCGAGCGGCCTGGATAGACTACAGCGCCTGGATCAACTCGCCTCCACA
GAACAGTGGGATATACGATCAGGAAAATGGCGTCCTTCAAAAGTACCATC
TTGACAACAAGCGTATATTTTTTACTCTTTACGCTCAGAACTTCTGTGAG
TTTGGGAAGGATCTGGCCGAGCATGTCTTCTATCTGGGCCTTAAACAGAA
CAAGGACTTTTACGACATATACTCTTGTGGATTCCAAACGGAAAACCCTA
TGACTTGTGTTTAAAAGCTTTCTAGACCAT

BS22346.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-RD 1185 CG1092-PD 236..1185 15..964 4750 100 Plus
CG1092-RC 1185 CG1092-PC 236..1185 15..964 4750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-RD 1310 CG1092-RD 258..1210 15..967 4765 100 Plus
CG1092-RC 1492 CG1092-RC 440..1392 15..967 4765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4267264..4268216 15..967 4765 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:39:27 has no hits.

BS22346.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:54 Download gff for BS22346.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RB 295..1240 17..962 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:45 Download gff for BS22346.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 442..1387 17..962 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:50 Download gff for BS22346.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 442..1387 17..962 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:50 Download gff for BS22346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4267266..4268211 17..962 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:45 Download gff for BS22346.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 92988..93933 17..962 100   Plus

BS22346.pep Sequence

Translation from 16 to 963

> BS22346.pep
MPQMGDLMQLLTELQNDPEPFEAKQKTLDFFISCNVHHALEDCYRETYEY
FKPLFGYIVTKNMLNGESHELDDFLGILDRFVVRFQKDRESNPILSKLAT
YKQKFKTPRVYFHARDLSREYKDLRIYRESYEHNVRNLEQHRKLNSTYEL
GVQRTMLDWSMYLFQSRNKPMSYFYSTFTVHLYMMLFNSLERQRDFTRFR
EDVECLRLPQFVNVLDEARMLAVIYLKSFRAAWIDYSAWINSPPQNSGIY
DQENGVLQKYHLDNKRIFFTLYAQNFCEFGKDLAEHVFYLGLKQNKDFYD
IYSCGFQTENPMTCV*

BS22346.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PD 394 CG1092-PD 80..394 1..315 1695 100 Plus
CG1092-PC 394 CG1092-PC 80..394 1..315 1695 100 Plus