BS22347.complete Sequence
2762 bp assembled on 2011-02-14
GenBank Submission: KX804418
> BS22347.complete
GAAGTTATCAGTCGACATGGCGGGTAGTTGCCACAAAGAGCAGGGACCGG
AGGAGAGTGGGCCACAGGCGGTTCCACTGAATGTCTCCCAGGCGATCAGC
ACCTCCACCATGGAGGCAGGCAAGTCGAGGTCCAGGAATCTGCTGCCCAT
GTGCCAGATGCCTATATCCATTAGTGTGTCGATTTCGGAGCGACTGCAGC
AACAGGCGGATCAGCAGCTGCCCAGCGAACAGATCACACCCACATCACAG
CAACCGCAACAGCAGCATCACCACTCGCATCACCATCGCCACAAGCATCG
CTGCAGTTGCTCGCAGGAGAGCCACATTTCCGGCTCGGCCTCCTCGGGCA
ACTCCTCCAATCCGCCAGCCTTCAATCTAGTCAAGCTGTTCATTAAGCAG
AAGAGCAGCAACAGCAGTGGCGGCCAGGAGGATTTGGGAGCCCAGGCAAG
TGCGCACACCTGTATGGATGTCTCTTCCGGCTGCTGGCCGTCCAGCGATG
CGGCCAGCTCCAGTAGTGGCTCCTTGGAGCAGCGACTTCGCAAGAAGAGT
ATGAACGACTCGGGCAAGGGATCGGCAGTTAGTCGGCATGACGAGGAGGA
GCACTACCCAGATACGGAGACACCCAGACGTCAGCTGAGGGCCCGATCGG
AGGCAGTGTTCTACGATGATGTCGCCAGCTCCAGTTCCACGGGATCGTTG
ACTGCGACCAATTCACCAGCACATCGTCGTCGCAGTATGCCACTAAGGAA
TCCACAACTGTACCAACTGGCTGCTCAGGTATCCACTGGCAGTCAAATGT
CCTCGGAGGCCAGCTCGGAACAGCTAACCCAGGTGCCCCGGCGGGCAGAA
GCTGGTTGCGGAACCAGTACGCGTCCGTTGTCGTGTGCCTCCAGCTCCGA
AATGATCACGCGCTCCATGCAGACCTCCTGCGGATCACTGAGCACCACCA
GGAGCAGTCTGAGCGATCGCTATCGCTGTGTGCCGCCATCGTTCCTCGAG
AAACTCAATAACTTGGGTGAGGAGCGACAGGCGCCCATTTACGTAATCTA
TCCAAACTATGCCCTGCCCGATTTGGGATTCGTTAAGACTAATGCCAGCA
CAGACGTGATCTTCTCACCCTTCAACTACAAGATGACAATGGATGGAGCG
ACTGGTAGTACCAGCAGCTCGGGATCTCTAAGGAAGCAGCGCAACAGCAG
CCAGAGCGTGAGCGAAGATGAAATCCTCAAGACGCTGGACTACAAGCACG
TTGCCGACTGGCAGTCGCTGGCCACCTTGCTGCCGTCGGAATACCGAAGG
CGGCTGCAGCACATTCCGGAGGTGAAGCACCTGGTGCGGCAACTGGATGC
GGAGCTATCACAACGTCCCCTTTTCTGTATGTCGCCGCCGCTCCGGCGAA
ATCGCACGCACATCTGCGACTGTGCCAAGTACTTCCAGGGCCAGCAGACC
CAAACGGACGAGGCATCCAGCTCGGGATCCAGTCAACAGCCCAGCTCCGG
TTATCGTGGCTCATCAACGCTGCTCACCGACTCCGAGCTGGACGTGGATC
CGCTGAAGCAGATGTATGTGTACCAGTACGATCAGCAGCGCATGGACTCG
GGCGTGGAAACCAGTCCCGGTAGTCAGTTAACTCAAACCCCGCCGCAACC
CATGCCCCGAAGCATTCTGCGCAAGGCACACTCCGCACAGTCGCGCTCCA
AGCGCAATTCCATGATCGAGGCACAGCAGACGCAGAAGCTAACCAAGCTG
GAGAAGCGGCGCAGTTTGCAGGAACCACCGAACAACTACGGTTTGGGCTC
CACCGACGAACTTGCCGATGTCTTCGAGGAGGAGGAGCACAGTCAGCCGG
CGCCGCCGGTGAAACAGAGGCTTTCCCGCAAGGATCTGGATGCCAGGGCA
CGGGCTGAAAGCTTCCTGGCCTCCTTGCCGCGTTCTGAGCTCAAGTATTA
CGCCGAGATCGCGTCGATTCTAGAGTCTTCCGGCGAGCATGTGACTTACG
ATGCTGCTGCCCTGAAAAAGGAGGTGAGCCGAGTGCTTAGCCAGCAGAAG
AAAGTGTCATTCAATGATGAGGGTGTGGCTGCCGGATTGCAGCAACACGC
CAAACGTTTCGCCACACCTCCCAACTCGCCCAACATCTCCATGGGAGCAC
TGAAACGCGATACAGTGGATGTGCTGGAGCAGCGCAAGATCGAAAGCAAT
CGCTTTAAGCGCCTGCAAATCCAGTGGGAGCTCATGAGCAAGGACTCGAG
TATGCTCAAGGAGCTGGCCAGCGAGGCGGCCACCAAGAGCGGCGGCTCCA
CGCCCACCTCGGGCAATTCGACTGGCTCCAACTCAGCGCCAAGGTCTAGG
ATTCCTAGGCCTGTTAGCTACCCAGCGGGCAGAAGTTCCACGCCCACTTC
GTCACGTACTGCCCCCGTTTTGGCCACGCCCTCACCGGCTAGGCCGGCCA
CTCCCAAGACTGTCACTAAAAGCCACAACAAACCCGGTCTCTTTACCTCC
CCCCGCCCTAGCAGACTGACCAGCGCCCAGGAAGCAGCCGGCGGTAACAA
GGTCAGCACTCGATCGCCCAGCAGGATTGTGCAGCCAAAGCGTTATAGTC
TTGCCGGTGCGACCACGCCCACATCCACAACACCCACATCGGCCAGGGCA
CGCACGCCCACAAATCGAGTGGCGGTTACGGCGCCAAACACGCCCAAACG
ACAGGCGGTTGCCCAGTCGCCCCGACCCACCTCGCGAGTGCGTTGAAAGC
TTTCTAGACCAT
BS22347.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7029-RI | 4521 | CG7029-PI | 1791..4521 | 16..2746 | 13535 | 99.7 | Plus |
| CG7029-RD | 4554 | CG7029-PD | 1824..4554 | 16..2746 | 13535 | 99.7 | Plus |
| CG7029-RC | 4554 | CG7029-PC | 1824..4554 | 16..2746 | 13535 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7029-RI | 6474 | CG7029-RI | 2393..5123 | 16..2746 | 13535 | 99.7 | Plus |
| CG7029-RD | 6695 | CG7029-RD | 2614..5344 | 16..2746 | 13535 | 99.7 | Plus |
| CG7029-RC | 6507 | CG7029-RC | 2426..5156 | 16..2746 | 13535 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22789634..22792000 | 16..2382 | 11715 | 99.7 | Plus |
| 3R | 32079331 | 3R | 22792255..22792599 | 2380..2724 | 1725 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..7018 | 194..426 | 206 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2466 | 187..299 | 193 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2418 | 199..310 | 174 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6856 | 187..306 | 170 | 65.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1149 | 196..273 | 128 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2385 | 236..299 | 124 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2854 | 248..305 | 121 | 69.5 | Plus |
BS22347.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 18:28:37 Download gff for
BS22347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7029-RC | 2436..5164 | 17..2745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:28 Download gff for
BS22347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7029-RC | 2436..5164 | 17..2745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:53 Download gff for
BS22347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7029-RC | 2427..5155 | 17..2745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:53 Download gff for
BS22347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22789635..22792000 | 17..2382 | 99 | -> | Plus |
| 3R | 22792258..22792599 | 2383..2724 | 100 | -> | Plus |
| 3R | 22792658..22792678 | 2725..2745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:28 Download gff for
BS22347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18617980..18618321 | 2383..2724 | 100 | -> | Plus |
| arm_3R | 18618380..18618400 | 2725..2745 | 100 | | Plus |
| arm_3R | 18615357..18617722 | 17..2382 | 99 | -> | Plus |
BS22347.pep Sequence
Translation from 16 to 2745
> BS22347.pep
MAGSCHKEQGPEESGPQAVPLNVSQAISTSTMEAGKSRSRNLLPMCQMPI
SISVSISERLQQQADQQLPSEQITPTSQQPQQQHHHSHHHRHKHRCSCSQ
ESHISGSASSGNSSNPPAFNLVKLFIKQKSSNSSGGQEDLGAQASAHTCM
DVSSGCWPSSDAASSSSGSLEQRLRKKSMNDSGKGSAVSRHDEEEHYPDT
ETPRRQLRARSEAVFYDDVASSSSTGSLTATNSPAHRRRSMPLRNPQLYQ
LAAQVSTGSQMSSEASSEQLTQVPRRAEAGCGTSTRPLSCASSSEMITRS
MQTSCGSLSTTRSSLSDRYRCVPPSFLEKLNNLGEERQAPIYVIYPNYAL
PDLGFVKTNASTDVIFSPFNYKMTMDGATGSTSSSGSLRKQRNSSQSVSE
DEILKTLDYKHVADWQSLATLLPSEYRRRLQHIPEVKHLVRQLDAELSQR
PLFCMSPPLRRNRTHICDCAKYFQGQQTQTDEASSSGSSQQPSSGYRGSS
TLLTDSELDVDPLKQMYVYQYDQQRMDSGVETSPGSQLTQTPPQPMPRSI
LRKAHSAQSRSKRNSMIEAQQTQKLTKLEKRRSLQEPPNNYGLGSTDELA
DVFEEEEHSQPAPPVKQRLSRKDLDARARAESFLASLPRSELKYYAEIAS
ILESSGEHVTYDAAALKKEVSRVLSQQKKVSFNDEGVAAGLQQHAKRFAT
PPNSPNISMGALKRDTVDVLEQRKIESNRFKRLQIQWELMSKDSSMLKEL
ASEAATKSGGSTPTSGNSTGSNSAPRSRIPRPVSYPAGRSSTPTSSRTAP
VLATPSPARPATPKTVTKSHNKPGLFTSPRPSRLTSAQEAAGGNKVSTRS
PSRIVQPKRYSLAGATTPTSTTPTSARARTPTNRVAVTAPNTPKRQAVAQ
SPRPTSRVR*
BS22347.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7029-PI | 1506 | CG7029-PI | 598..1506 | 1..909 | 4637 | 100 | Plus |
| CG7029-PD | 1517 | CG7029-PD | 609..1517 | 1..909 | 4637 | 100 | Plus |
| CG7029-PC | 1517 | CG7029-PC | 609..1517 | 1..909 | 4637 | 100 | Plus |
| CG7029-PA | 1744 | CG7029-PA | 836..1744 | 1..909 | 4637 | 100 | Plus |
| CG7029-PG | 1471 | CG7029-PG | 564..1471 | 1..909 | 4620 | 99.9 | Plus |
