Clone BS22351 Report

Search the DGRC for BS22351

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:223
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptMED10-RB
Protein status:BS22351.pep: full length peptide match
Sequenced Size:434

Clone Sequence Records

BS22351.complete Sequence

434 bp assembled on 2011-01-27

GenBank Submission: KX801532

> BS22351.complete
GAAGTTATCAGTCGACATGTCTGCACCGCTAGAGAACCTTGAGACCCAGC
TAGAGATGTTCATCGAGAATGTTCGTCAGATCCGCATAATCGTAAGCGAT
TTTCAGCCACAGGGTCAAAATGTACTCAACCAGAAAATTAACAGCTTGGT
GACCGGCCTACAAGAGATCGACAAGCTGCGCTCCCAGGTGCAGGACGTCT
ATGTGCCATTTGAAGTGTTTTTTGACTACATCGACCAAGACAAGAATCCT
CAGCTGTACACCAAGGATTGCGTGGAGAAGGCACTGGCCAAGAACGAGGA
GGTCAAGGGCAAGATCGAGGGCCTGAAGAAGTTCAAAACGAATCTGCTGC
TGGAGCTGTATAAAACATTTCCCAATGAGATGAACAACTACCGCGCTTAT
CGCAAGGACTCCATGTAAAAGCTTTCTAGACCAT

BS22351.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
MED10-RB 402 CG5057-PB 1..402 17..418 2010 100 Plus
MED10-RC 402 CG5057-PC 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
MED10-RB 597 CG5057-RB 119..520 17..418 2010 100 Plus
MED10-RC 638 CG5057-RC 119..520 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16232380..16232659 139..418 1400 100 Plus
3L 28110227 3L 16232202..16232323 17..138 610 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:41:26 has no hits.

BS22351.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:57 Download gff for BS22351.complete
Subject Subject Range Query Range Percent Splice Strand
MED10-RB 174..573 17..416 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:49 Download gff for BS22351.complete
Subject Subject Range Query Range Percent Splice Strand
MED10-RC 119..518 17..416 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:41 Download gff for BS22351.complete
Subject Subject Range Query Range Percent Splice Strand
MED10-RC 119..518 17..416 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:41 Download gff for BS22351.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16232380..16232657 139..416 100   Plus
3L 16232202..16232323 17..138 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:49 Download gff for BS22351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16225302..16225423 17..138 100 -> Plus
arm_3L 16225480..16225757 139..416 100   Plus

BS22351.pep Sequence

Translation from 16 to 417

> BS22351.pep
MSAPLENLETQLEMFIENVRQIRIIVSDFQPQGQNVLNQKINSLVTGLQE
IDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKI
EGLKKFKTNLLLELYKTFPNEMNNYRAYRKDSM*

BS22351.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
MED10-PB 133 CG5057-PB 1..133 1..133 680 100 Plus
MED10-PC 133 CG5057-PC 1..133 1..133 680 100 Plus