BS22353.complete Sequence
1550 bp assembled on 2011-01-27
GenBank Submission: KX803421
> BS22353.complete
GAAGTTATCAGTCGACATGAGTGTCTGGATGAGCGGGCCCCGAAATTTCG
CACTAGCCACACAAATTATACGGGAAACTATGAGTTTGCACTACGCGGAA
TCGGAATCTTCGCCGTCAGAGAGCAAAATGGACATCTCGGAGACGCCGAC
GGACTCAACGGGCGTCTCGCCGCTGGCGGATGATGTTTTGCCCACCGCGC
CGGAGAAGAATATCCTGAAATTGGAGCAGGCCAAGCAGGATCACGATAAG
GAGGAACTGGAGTTCAAGACGACCTCCGCGCTGGACAACAGAATACTGCG
TCCAGAGCTGCTGCCCATGGAGGCGATGCCACAACGACACAACATCATCG
AGCGCACCCTGGCCAACAGCCATCCGCTGATGTCGCCAACCAACACGGAC
TCAGACTCGGAACCCTTTCAGCTGAAGAAGCAGGAGAAACAGCTGCCGAG
GAGCAACTTTCCGGACGTTGTGCCCACCACGGAGACGGTGCAGGTGAAGA
ACAACCTGAACCAATGCCGGAACAAGCCGCAGGACGCCAAGGTCAGCCTG
CTAAGGGCCAACAGTCCGGATATCCTGAGCAGCGAGTCAGATGCGGATGT
GTCCCAGTACTTGGCCGCCGTGGAGTCTAACTTTCAGTCCGTTTCCCTGA
TGCCCAATGGCAATGGCAAGAAATCCAAACGATCGACTGCACTCCCTGGT
GGCGAGGACATATCTAGCCTGGATTCCATCTCCAATCACAGCTTCGACGA
TGACGAGGACATTGAGCACAATTTGGCCTCTCTAAGTCCATCGAGCTCCC
TGATTGATGGCTTAGACGGAGAGGATGACGACGACGACTGCGAGGGTCCG
GAACTGCTGCCCGACCACGACGACGACTTGGAACTGGACCTGGAGTTCGG
TTTGGCCACCACGCCCACGCCAAATGCTCCGGCATCGGCTACGGCTGCCT
CAACTCTGCCACAGTATACGGCTGCTGAAGAGAGACGTGATTCGCGGAAT
TGGCAGAAGATCACTTTACCGGATGGACGCACTAGGGAGATCGACATGCG
GGTCATAGAGCCCTACAAGCGTGTGCTGTCCCACGGCGGCTATCTCAAAT
CTGGCGGTCAGAACGCCATTGTCATCTTTTGCGCCTGTCACCTGCCGGAT
AGGTCGAGGGCCGACTACAGCTACGTGATGGACAATTTGTTTCTGTACGT
GGTCAAGACCCTGGAACAGTTGGTCACTGATGACTATGTGCTAATCTATC
TGCATGGCGGCTCCAATAGGCGTAATGTGCCACCTTTTCCCTGGCTTAAA
CGGTGTTATCAGCTGCTTGATCGCCGACTGCGCAAAAGCCTGAAGCACAT
GTATTTGGTGCATCCGACATTCTGGATAAAATCGCTGGTTTGGATGGCGC
GGCCTTTTGTGAGCACAAAGTTTTGGCGAAAGCTGGTCTACGTAAAGTCC
CTGGAGGAACTGGGCATGCACGTGGTCGTGGAGAAGGCAGCCATTCCGGA
GAAGGTCAAGCAATACGACGCCAAGCGGCACTGAAAGCTTTCTAGACCAT
BS22353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11593-RC | 1455 | CG11593-PC | 1..1455 | 80..1534 | 7245 | 99.9 | Plus |
| CG11593-RB | 1455 | CG11593-PB | 1..1455 | 80..1534 | 7245 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11593-RC | 2582 | CG11593-RC | 129..1646 | 17..1534 | 7560 | 99.9 | Plus |
| CG11593-RB | 2773 | CG11593-RB | 320..1837 | 17..1534 | 7560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4038811..4040033 | 1305..83 | 6085 | 99.8 | Minus |
| 3L | 28110227 | 3L | 4038459..4038581 | 1534..1412 | 615 | 100 | Minus |
| 3L | 28110227 | 3L | 4038642..4038753 | 1413..1302 | 560 | 100 | Minus |
| 3L | 28110227 | 3L | 4040096..4040163 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:41:54 has no hits.
BS22353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:58 Download gff for
BS22353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11593-RB | 320..1836 | 17..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:01 Download gff for
BS22353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11593-RB | 320..1836 | 17..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:53 Download gff for
BS22353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11593-RB | 320..1836 | 17..1533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:53 Download gff for
BS22353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4038460..4038579 | 1414..1533 | 100 | <- | Minus |
| 3L | 4038642..4038752 | 1303..1413 | 100 | <- | Minus |
| 3L | 4038814..4040031 | 85..1302 | 99 | <- | Minus |
| 3L | 4040096..4040163 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:01 Download gff for
BS22353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4038460..4038579 | 1414..1533 | 100 | <- | Minus |
| arm_3L | 4038642..4038752 | 1303..1413 | 100 | <- | Minus |
| arm_3L | 4038814..4040031 | 85..1302 | 99 | <- | Minus |
| arm_3L | 4040096..4040163 | 17..84 | 100 | | Minus |
BS22353.pep Sequence
Translation from 16 to 1533
> BS22353.pep
MSVWMSGPRNFALATQIIRETMSLHYAESESSPSESKMDISETPTDSTGV
SPLADDVLPTAPEKNILKLEQAKQDHDKEELEFKTTSALDNRILRPELLP
MEAMPQRHNIIERTLANSHPLMSPTNTDSDSEPFQLKKQEKQLPRSNFPD
VVPTTETVQVKNNLNQCRNKPQDAKVSLLRANSPDILSSESDADVSQYLA
AVESNFQSVSLMPNGNGKKSKRSTALPGGEDISSLDSISNHSFDDDEDIE
HNLASLSPSSSLIDGLDGEDDDDDCEGPELLPDHDDDLELDLEFGLATTP
TPNAPASATAASTLPQYTAAEERRDSRNWQKITLPDGRTREIDMRVIEPY
KRVLSHGGYLKSGGQNAIVIFCACHLPDRSRADYSYVMDNLFLYVVKTLE
QLVTDDYVLIYLHGGSNRRNVPPFPWLKRCYQLLDRRLRKSLKHMYLVHP
TFWIKSLVWMARPFVSTKFWRKLVYVKSLEELGMHVVVEKAAIPEKVKQY
DAKRH*
BS22353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11593-PC | 484 | CG11593-PC | 1..484 | 22..505 | 2525 | 100 | Plus |
| CG11593-PB | 484 | CG11593-PB | 1..484 | 22..505 | 2525 | 100 | Plus |
| RhoGAP68F-PC | 419 | CG6811-PC | 61..185 | 373..503 | 225 | 35.1 | Plus |
| RhoGAP68F-PE | 475 | CG6811-PE | 117..241 | 373..503 | 225 | 35.1 | Plus |
| RhoGAP68F-PD | 476 | CG6811-PD | 118..242 | 373..503 | 225 | 35.1 | Plus |
