BS22356.complete Sequence
2012 bp assembled on 2011-02-17
GenBank Submission: KX800679
> BS22356.complete
GAAGTTATCAGTCGACATGGTGCAAAAATTCCAGTCACCCGTTCGCGTCT
ACAAATATCCTTTTGAGCTGGTGATGAAGGCCTATGAGCGGCGGTTTCCC
ACATGCCCGCAGATGCCCATCGTCCTGGACTGTGAGGTCATTAAGGACGA
GTCCCTGGAGGACGGGGCCAAGCGAAACACGAGCCGACGCTGCAAGCTGG
CGGTCGACGCGCCGTACATCTTCAAAAAGCTTATTGGCGTGGACCATGTG
TACTTCCTGCAGCACAACTTCCTGGACCTGGCCAACCGCACGCTGAGCAT
CGAGGCGGTCAACGAGAGCTTCTCGTCGCGCATCGAAATCTTCGAGCGGT
GTCGCTACTACGCCCATCCGGACAACTCCGAATGGACGTGCTTTGACCAG
TCGGCCACGCTGGACATTAAGAACTTCTTCGGCTTCGAGCACTCGATGGA
AAAGATGGGCATGAAGCAGTACACCCAGACGACGCTGAAGGGCAAAGAAA
TCATTGAGTTCTTTATCGGGCAGCTGCGCGAGGAAGGCATCACGCATGTG
GAGCGTTGGACATCGCCCAGTGATGCAACCAAATCGCCAACCCTCGATCA
GGCTTCGGATCAGCAGCATAGCATCTTGCTGGACGGCGACTTTATCGCAC
GCAGCCTGGGCCAGCTGTCGCCCATGCAGGAGTCCAAGCTGCTGGAGCTG
CGAAAAATGCTGGATGGTGTCGATGACTTGGAGCGTGTGCCCAGTTATCA
GACCATCCTGCGTTTCTTAGCAGCCAGGGACTGGCACGTTAGCCAGGCCT
ACGCCATGCTCTGCGACTCGCTTCGCTGGCGTCGGGAACATCGCATCGAC
GCACTGTTGGCGGAGTACTCCAAGCCAGCCGTGGTAGTGGAACACTTTCC
GGGCGGCTGGCATCATTTGGACAAGGACGGTCGACCCGTTTACATTCTGC
GCCTGGGACACATGGACGTCAAGGGCCTGCTAAAGTCACTGGGAATGGAT
GGACTACTGCGATTGGCTTTGCACATCTGCGAGGAAGGCATTCAGAAGAT
CAATGAATCCGCCGAACGCCTGGAGAAGCCAGTTCTCAACTGGTCACTGC
TTGTCGATCTGGAGGGTCTTTCTATGCGCCACCTCTGGCGTCCCGGCATC
AAAGCCCTGCTCAACATCATCGAGACTGTGGAGCGCAATTACCCAGAGAC
CATGGGCCGTGTCCTAGTGGTGCGAGCGCCCAGAGTGTTTCCCATTGCAT
GGACAATCGTTAGTGCTTTTATTGATGAGCACACCCGATCCAAGTTCCTG
TTCTACGGCCCCGACTGTGCGCACATGAAGGATGGCCTGGCCCAGTATCT
CGACGAGGAGATTGTGCCTGACTTCCTGGGCGGACCGTGCAAGACCATGA
TTCACGAGGGCGGACTGGTGCCTAAGACGTTGTACAAGATGAATTCGCTG
GAGGATCACGACGACGAAGTGACCGCCGAGCTGCCCACCACTGCCGCGGC
ACAGGCTTTGGTTCCAGGCAAGCGCCTGTCTGCCAACCAGCAACACGATC
ATCGCAATCTGTACAAGAGTGTGGATCTCAAGGCCGGATTCGCGCACGAG
CTGCTCATCCGGAACGAGGATCCCAAGAGTGTGCTCACCTGGGACTTCGA
TGTGATGCGCAACGATCTGCACTTTACGCTCTACCGGGTCACCCAGGAGC
TTCCGGAAAAGAATGATTCCGCCGTCTCGTACTTTGATCTGCAGGACTTC
GTCGAGGGCGTCAATTATTTCCGTGAGGAGCCAACGCTGATTTGCCGGCA
CAAGGAGAGCGTCCAGGGGTCGCACGTGATGCATCACAACGACAGCTATC
TTATGCACTGGTTTAGTCCATCGGGTGCCCAGTTAAACGTCTTCTACGAG
GTGCTCAGCTCGGCCAACTACAAGGGTTCGATGACCAGCCTGCAGTCGGC
ATTCTCATCGAACTCGTCGGCGGCCAGCTCGGTGCAGAGTCGATGAAAGC
TTTCTAGACCAT
BS22356.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| retm-RB | 2124 | CG9528-PB | 1..1980 | 17..1996 | 9900 | 100 | Plus |
| retm-RC | 1980 | CG9528-PC | 1..1980 | 17..1996 | 9900 | 100 | Plus |
| retm-RA | 1980 | CG9528-PA | 1..1980 | 17..1996 | 9900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| retm-RB | 3358 | CG9528-RB | 333..2312 | 17..1996 | 9900 | 100 | Plus |
| retm-RC | 3700 | CG9528-RC | 333..2312 | 17..1996 | 9900 | 100 | Plus |
| retm-RA | 3358 | CG9528-RA | 333..2312 | 17..1996 | 9900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6452121..6453059 | 1016..78 | 4695 | 100 | Minus |
| 2L | 23513712 | 2L | 6450693..6451017 | 1715..1391 | 1625 | 100 | Minus |
| 2L | 23513712 | 2L | 6449852..6450133 | 1996..1715 | 1410 | 100 | Minus |
| 2L | 23513712 | 2L | 6451792..6452056 | 1279..1015 | 1310 | 99.6 | Minus |
| 2L | 23513712 | 2L | 6451618..6451737 | 1393..1274 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 6455534..6455597 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:11 has no hits.
BS22356.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 16:37:40 Download gff for
BS22356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retm-RA | 338..2316 | 17..1995 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:18 Download gff for
BS22356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retm-RA | 333..2311 | 17..1995 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:57 Download gff for
BS22356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| retm-RA | 333..2311 | 17..1995 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:57 Download gff for
BS22356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6451797..6452055 | 1016..1274 | 100 | <- | Minus |
| 2L | 6449853..6450132 | 1716..1995 | 100 | <- | Minus |
| 2L | 6450693..6451014 | 1394..1715 | 100 | <- | Minus |
| 2L | 6451618..6451736 | 1275..1393 | 100 | <- | Minus |
| 2L | 6452122..6453057 | 80..1015 | 100 | <- | Minus |
| 2L | 6455535..6455597 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:18 Download gff for
BS22356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6451618..6451736 | 1275..1393 | 100 | <- | Minus |
| arm_2L | 6451797..6452055 | 1016..1274 | 100 | <- | Minus |
| arm_2L | 6449853..6450132 | 1716..1995 | 100 | <- | Minus |
| arm_2L | 6450693..6451014 | 1394..1715 | 100 | <- | Minus |
| arm_2L | 6452122..6453057 | 80..1015 | 100 | <- | Minus |
| arm_2L | 6455535..6455597 | 17..79 | 100 | | Minus |
BS22356.pep Sequence
Translation from 16 to 1995
> BS22356.pep
MVQKFQSPVRVYKYPFELVMKAYERRFPTCPQMPIVLDCEVIKDESLEDG
AKRNTSRRCKLAVDAPYIFKKLIGVDHVYFLQHNFLDLANRTLSIEAVNE
SFSSRIEIFERCRYYAHPDNSEWTCFDQSATLDIKNFFGFEHSMEKMGMK
QYTQTTLKGKEIIEFFIGQLREEGITHVERWTSPSDATKSPTLDQASDQQ
HSILLDGDFIARSLGQLSPMQESKLLELRKMLDGVDDLERVPSYQTILRF
LAARDWHVSQAYAMLCDSLRWRREHRIDALLAEYSKPAVVVEHFPGGWHH
LDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGIQKINESAE
RLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVL
VVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIV
PDFLGGPCKTMIHEGGLVPKTLYKMNSLEDHDDEVTAELPTTAAAQALVP
GKRLSANQQHDHRNLYKSVDLKAGFAHELLIRNEDPKSVLTWDFDVMRND
LHFTLYRVTQELPEKNDSAVSYFDLQDFVEGVNYFREEPTLICRHKESVQ
GSHVMHHNDSYLMHWFSPSGAQLNVFYEVLSSANYKGSMTSLQSAFSSNS
SAASSVQSR*
BS22356.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| retm-PB | 707 | CG9528-PB | 1..659 | 1..659 | 3472 | 100 | Plus |
| retm-PC | 659 | CG9528-PC | 1..659 | 1..659 | 3472 | 100 | Plus |
| retm-PA | 659 | CG9528-PA | 1..659 | 1..659 | 3472 | 100 | Plus |
| CG13893-PA | 407 | CG13893-PA | 5..357 | 214..589 | 276 | 22.2 | Plus |
