BS22357.complete Sequence
995 bp assembled on 2011-01-27
GenBank Submission: KX804108
> BS22357.complete
GAAGTTATCAGTCGACATGTACTTACTGCCGTTCGGAGTTTCAACCCGCC
ACCAAATCACAGAGTGCCTGCAAGAAGTGCGAACATTATCTGGGGAAGTA
CGGCAAACCCAGTGCCTGCGAGTGCTGCAAGATTGTGGCCGCCTTCGGAG
GATCCAAGTGCATGCGGTCAATGGCAAATTGCTTTGCTGGCTGTGTGCCT
GCGCCTACAAGCGAGCTCTACTCAAGGCACAGCAGGAGGGCCGTATACCG
ATGTCCAAGAAGAGGCCACACGAGAAGACCTCGTCCTCGCACAGAGACAG
CGCTGCGGCCAAGAAGCCATCGCGCAACGAGCTGGGCAAGAGCGGCAGCG
GTGCCAATAATAGCGGCGTGAATGCCGTAAGCGGAGCTGGATTGGATCTA
CCTGATAAGATCTCACGCGGAAATGGTGGTAATGGGACCATTGCAGCGCC
TGCTGCCATCACCGTGGACACCAATTCGTCCGATCATGTGGTTGCTATTA
CATACCTAAAAGAACGCATCGCCAGTCTGGAGAAGCGTCTGAATCAAAAA
GACAAAGAGCTGCTCGAAAAAGACAAGCAGCTGACTGAACTGAAGGGCAA
AAACTTCGAGAAGGAGAACGACATGCGCAACCGGCTGAAGGAAGTGGAGC
GTCTGCACGACATGAAGGTGGACAACTTGAACCGCAAGATCGCCAGTGTG
CTCAAGGAGCTGGCCGTGCTTAAGAAGAGCAGCAACAAAAAGACCGCTGC
CATTAGCAAGGCAGAAAAGGAGATCATCAAACGTGAGAACTTATCGCCCA
AGGAGGAAATTCTGGCGACAACGGGGCCGGAAAAACCGACCAAGGCCTCG
TCGGAGCCCGCCGATCTGGACAAGGACGAAAAGAGTCGCGATCGAGACGA
GGAACGCAGCGAGCAGGGGGATAGGGCCAGTGTGCGGTCACGATCCGCCT
CCAGCAGCCCCACGCCCTCGTCCAACTGAAAGCTTTCTAGACCAT
BS22357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4452-RA | 1173 | CG4452-PA | 360..1173 | 166..979 | 3980 | 99.3 | Plus |
| CG4452-RE | 471 | CG4452-PE | 117..471 | 17..371 | 1775 | 100 | Plus |
| CG4452-RA | 1173 | CG4452-PA | 117..266 | 17..166 | 750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4452-RE | 1583 | CG4452-RE | 265..1227 | 17..979 | 4725 | 99.4 | Plus |
| CG4452-RA | 1670 | CG4452-RA | 508..1321 | 166..979 | 3980 | 99.3 | Plus |
| CG4452-RA | 1670 | CG4452-RA | 265..414 | 17..166 | 750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9368900..9369314 | 166..580 | 2015 | 99 | Plus |
| 3L | 28110227 | 3L | 9369543..9369944 | 578..979 | 1980 | 99.5 | Plus |
| 3L | 28110227 | 3L | 9368101..9368216 | 53..168 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:42:44 has no hits.
BS22357.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:59 Download gff for
BS22357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4452-RC | 142..1103 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:27 Download gff for
BS22357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4452-RE | 265..1226 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:18 Download gff for
BS22357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4452-RE | 265..1226 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:18 Download gff for
BS22357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9369546..9369943 | 581..978 | 99 | | Plus |
| 3L | 9367978..9368013 | 17..52 | 100 | -> | Plus |
| 3L | 9368101..9368214 | 53..166 | 100 | -> | Plus |
| 3L | 9368901..9369314 | 167..580 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:27 Download gff for
BS22357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9361078..9361113 | 17..52 | 100 | -> | Plus |
| arm_3L | 9361201..9361314 | 53..166 | 100 | -> | Plus |
| arm_3L | 9362001..9362414 | 167..580 | 99 | -> | Plus |
| arm_3L | 9362646..9363043 | 581..978 | 99 | | Plus |
BS22357.pep Sequence
Translation from 16 to 978
> BS22357.pep
MYLLPFGVSTRHQITECLQEVRTLSGEVRQTQCLRVLQDCGRLRRIQVHA
VNGKLLCWLCACAYKRALLKAQQEGRIPMSKKRPHEKTSSSHRDSAAAKK
PSRNELGKSGSGANNSGVNAVSGAGLDLPDKISRGNGGNGTIAAPAAITV
DTNSSDHVVAITYLKERIASLEKRLNQKDKELLEKDKQLTELKGKNFEKE
NDMRNRLKEVERLHDMKVDNLNRKIASVLKELAVLKKSSNKKTAAISKAE
KEIIKRENLSPKEEILATTGPEKPTKASSEPADLDKDEKSRDRDEERSEQ
GDRASVRSRSASSSPTPSSN*
BS22357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4452-PA | 390 | CG4452-PA | 114..390 | 44..320 | 1356 | 98.2 | Plus |
