BS22358.complete Sequence
1322 bp assembled on 2011-01-27
GenBank Submission: KX803306
> BS22358.complete
GAAGTTATCAGTCGACATGGCCTTTTCCCGCCACAACATCGAGAAGCGCC
GACTCATCGAGCTCGTGCGACTCAACCCAATCCTCTGGGACTGCCGCCTG
CCACACTACAAGCGTTCGGACAAGCGAAAAGCCATCAAATGGAACGAGTT
GGGGCGGCTCTTCAACGTTAATGGCGAGCGGGTGCAGCGCACGTTTACTT
CGCTCCGCGAGATCTTCCGCCGCGAACTGAACCACGAAAAGATGCTGGGC
ACCACGCGCTTCAAGTCCAAGTGGGAATACTACGATGCCATGGCCTTCCT
CAAGGAGGTCATTCGGGAACGCAAATCTCGCGAGCGCATCAAGCACGGCT
CTTTGGATTCAGCACCAGTAGCCACAGGCAGCAGCAACAATAACAACAAC
TGCGTAAGCCGCAATAGCAGCAACAACAACAGCAGCAGTGCGGCCCTAGA
CGAATATCAGTACTTTGCTCCTAGCGACCCCAACAACCCGAACAATCAGC
CCCAGCTGCAGCCCGAACCAAAGAGTAGTCTGCCAGTGACTATTCCCAGT
CTAAGTCTCACCCTCAGCCAGTTGCCGGTGGCTCTGCAGCAGCAGGCCCA
GCATCTCCAAGCCTTACAGTTGCAACCGGACGTGACGCTGACTTCCCTGC
AGAAACAATCTTTACCCACTTCCCTTACCAATGCCACACCCGCGCCCTTA
GCACAAACCTCGCCCGCCCAGGTGCTGTCCAGCTCGCGCTCATGCAGCTC
TTCGCCCTCCATCTATATAAAGGACGAGCCGTGTTCTCCGGCAGGGGGTT
GTCCGGAAGAAGTGATGACCGGAAATGGACCAGAGGCGACAAGGAAGAAG
CTGGCCACAATTCGTCCGCAGACCAAACAGCAACTTAAAGCGCGTCTGCA
GCTGCCCACGCCCAAAAACTCATCATCGTACGCTACGTCGCCGCCCCATT
TGATCATCAATGCCAACAACGAGCTTATTGACACCGACGCCGGGGACCTG
GAGGAGGATCTGGACGACTTCGACGAGGACGACGACGTGACCGGACGCTG
CTCACCAATCGTCGGCCAGTCGGAGACGATGGGTGCCGACGGCAGACTTT
CGGTCGGAAGCATTTATATCGGTGACGGTGGCGACTGCGGAAGGGGTATG
GGTAGAGCCCACACTCAGGCGCGACACGTGCCTACCTCCAGAGAACTGCT
CTACATGAAATTCGGTGACTTTCTGGCCGCCAGATTGAACACTTTGCATG
AGACTGTAGCTAATGAGCTGATGAACAAGATGCTTCTGCTAATTGCAGAG
AAGTGAAAGCTTTCTAGACCAT
BS22358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12768-RD | 1290 | CG12768-PD | 1..1290 | 17..1306 | 6435 | 99.9 | Plus |
| CG12768-RC | 1290 | CG12768-PC | 1..1290 | 17..1306 | 6435 | 99.9 | Plus |
| CG12768-RB | 1290 | CG12768-PB | 1..1290 | 17..1306 | 6435 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12768-RD | 1855 | CG12768-RD | 340..1630 | 16..1306 | 6440 | 99.9 | Plus |
| CG12768-RC | 2214 | CG12768-RC | 411..1701 | 16..1306 | 6440 | 99.9 | Plus |
| CG12768-RB | 1960 | CG12768-RB | 157..1447 | 16..1306 | 6440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22913264..22914245 | 325..1306 | 4910 | 100 | Plus |
| 3L | 28110227 | 3L | 22911925..22912233 | 16..324 | 1530 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:40:36 has no hits.
BS22358.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:56 Download gff for
BS22358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12768-RA | 175..1463 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:24 Download gff for
BS22358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12768-RB | 158..1446 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:20 Download gff for
BS22358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12768-RB | 158..1446 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:20 Download gff for
BS22358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22911926..22912233 | 17..324 | 99 | -> | Plus |
| 3L | 22913264..22914244 | 325..1305 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:24 Download gff for
BS22358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22905026..22905333 | 17..324 | 99 | -> | Plus |
| arm_3L | 22906364..22907344 | 325..1305 | 100 | | Plus |
BS22358.pep Sequence
Translation from 16 to 1305
> BS22358.pep
MAFSRHNIEKRRLIELVRLNPILWDCRLPHYKRSDKRKAIKWNELGRLFN
VNGERVQRTFTSLREIFRRELNHEKMLGTTRFKSKWEYYDAMAFLKEVIR
ERKSRERIKHGSLDSAPVATGSSNNNNNCVSRNSSNNNSSSAALDEYQYF
APSDPNNPNNQPQLQPEPKSSLPVTIPSLSLTLSQLPVALQQQAQHLQAL
QLQPDVTLTSLQKQSLPTSLTNATPAPLAQTSPAQVLSSSRSCSSSPSIY
IKDEPCSPAGGCPEEVMTGNGPEATRKKLATIRPQTKQQLKARLQLPTPK
NSSSYATSPPHLIINANNELIDTDAGDLEEDLDDFDEDDDVTGRCSPIVG
QSETMGADGRLSVGSIYIGDGGDCGRGMGRAHTQARHVPTSRELLYMKFG
DFLAARLNTLHETVANELMNKMLLLIAEK*
BS22358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12768-PD | 429 | CG12768-PD | 1..429 | 1..429 | 2222 | 100 | Plus |
| CG12768-PC | 429 | CG12768-PC | 1..429 | 1..429 | 2222 | 100 | Plus |
| CG12768-PB | 429 | CG12768-PB | 1..429 | 1..429 | 2222 | 100 | Plus |
| CG12768-PA | 429 | CG12768-PA | 1..429 | 1..429 | 2222 | 100 | Plus |
| Mes2-PB | 437 | CG11100-PB | 55..182 | 5..143 | 296 | 46.8 | Plus |
