BS22359.complete Sequence
1115 bp assembled on 2011-01-27
GenBank Submission: KX803277
> BS22359.complete
GAAGTTATCAGTCGACATGGCCAAGGATAATCTAACAGCAGTGCTGCACG
GCATTGAGGACATGCGATTGGAGCAACGTCCTATTCCAGAGATTGCTGAT
GATGAGGTTCTCCTGGCCATGGATAGTGTTGGCATTTGCGGCTCTGATGT
ACACTACCTTGCACACGGACGCATTGGCGACTTTGTGCTCACTAAGCCCA
TGATTATTGGCCACGAGTCCGCCGGCGTGGTGGCTAAGCTGGGCAAGAAG
GTGACCACACTGAAGGTCGGCGACCGCGTGGCCATCGAACCGGGCGTACC
CTGCCGTAAGTGCGACCATTGCAAGCAGGGCAAATACAACCTGTGCCCCG
GAATGGTCTTCTGTGCCACGCCCCCCTACGACGGCAACCTCACCCGCTAC
TACAAGCATGCGGCGGACTTCTGCTTCAAGCTGCCCGACCACGTCACCAT
GGAGGAGGGCGCCCTGCTCGAGCCTCTGTCTGTGGGCGTGCATGCCTGCA
AGCGGGCGGAGGTCACCCTGGGCTCAAAAGTTCTCATCCTGGGAGCAGGA
CCCATTGGCCTGGTCACTTTAATGGCTGCTCAAGCCATGGGTGCGTCTGA
GATCCTCATTACGGATCTTGTGCAGCAACGCCTCGATGTAGCTAAAGAGC
TAGGTGCAACTCACACCCTCCTGCTGAAACGGGATCAGACCGCCGAGGAG
ACGGCGGTGCTCGTCCAAAAAACGATGGGCGGTCAGCCGGACAAGTCCAT
CGACTGCTGTGGAGCAGAGAGCAGTGCCCGACTGGCCATCTTCGCCACTC
GTTCCGGTGGCATTGTGGTGGTGGTGGGCATGGGAGCAGCTGAGATCAAG
TTGCCCCTAATTAATGCCCTGGCCCGGGAAGTGGACATCCGCGGCGTCTT
CCGCTACTGCAATGACTATGCCGCTGCCCTGGCCCTTGTCGCCTCCGGAA
AGGTGAATGTTAAGCGTCTGGTGACCCACCATTTCGACATCAAGGAAACG
GCAAAGGCGTTTGAAACGTCACGAAAGGGACTGGGTGGTGCCATCAAGGT
CATGATCCACGTCCAGCCCAGAGACACCAACAATCCTCGCAAATTCTAAA
AGCTTTCTAGACCAT
BS22359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sodh-1-RB | 1083 | CG1982-PB | 1..1083 | 17..1099 | 5415 | 100 | Plus |
| Sodh-1-RA | 1083 | CG1982-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
| Sodh-2-RA | 1083 | CG4649-PA | 13..1067 | 29..1083 | 2215 | 80.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sodh-1-RB | 1195 | CG1982-RB | 70..1153 | 17..1100 | 5420 | 100 | Plus |
| Sodh-1-RA | 1387 | CG1982-RA | 262..1345 | 17..1100 | 5420 | 100 | Plus |
| Sodh-2-RA | 1346 | CG4649-RA | 71..1138 | 16..1083 | 2220 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7053127..7053598 | 104..575 | 2360 | 100 | Plus |
| 3R | 32079331 | 3R | 7053862..7054082 | 574..794 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 10876899..10877362 | 104..567 | 1090 | 82.3 | Plus |
| 3R | 32079331 | 3R | 7054315..7054499 | 916..1100 | 925 | 100 | Plus |
| 3R | 32079331 | 3R | 7054140..7054261 | 794..915 | 610 | 100 | Plus |
| 3R | 32079331 | 3R | 10877428..10877648 | 574..794 | 460 | 80.5 | Plus |
| 3R | 32079331 | 3R | 10877883..10878049 | 917..1083 | 295 | 78.4 | Plus |
| 3R | 32079331 | 3R | 7052596..7052650 | 17..71 | 275 | 100 | Plus |
| 3R | 32079331 | 3R | 10877702..10877823 | 794..915 | 235 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:41:05 has no hits.
BS22359.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:57 Download gff for
BS22359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sodh-1-RA | 262..1342 | 17..1097 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:38 Download gff for
BS22359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sodh-1-RA | 262..1342 | 17..1097 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:33 Download gff for
BS22359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sodh-1-RA | 262..1342 | 17..1097 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:33 Download gff for
BS22359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7052596..7052649 | 17..70 | 100 | -> | Plus |
| 3R | 7052708..7052741 | 71..104 | 100 | -> | Plus |
| 3R | 7053128..7053597 | 105..574 | 100 | -> | Plus |
| 3R | 7053863..7054081 | 575..793 | 100 | -> | Plus |
| 3R | 7054140..7054261 | 794..915 | 100 | -> | Plus |
| 3R | 7054315..7054496 | 916..1097 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:38 Download gff for
BS22359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2878318..2878371 | 17..70 | 100 | -> | Plus |
| arm_3R | 2878430..2878463 | 71..104 | 100 | -> | Plus |
| arm_3R | 2878850..2879319 | 105..574 | 100 | -> | Plus |
| arm_3R | 2879585..2879803 | 575..793 | 100 | -> | Plus |
| arm_3R | 2879862..2879983 | 794..915 | 100 | -> | Plus |
| arm_3R | 2880037..2880218 | 916..1097 | 100 | | Plus |
BS22359.pep Sequence
Translation from 16 to 1098
> BS22359.pep
MAKDNLTAVLHGIEDMRLEQRPIPEIADDEVLLAMDSVGICGSDVHYLAH
GRIGDFVLTKPMIIGHESAGVVAKLGKKVTTLKVGDRVAIEPGVPCRKCD
HCKQGKYNLCPGMVFCATPPYDGNLTRYYKHAADFCFKLPDHVTMEEGAL
LEPLSVGVHACKRAEVTLGSKVLILGAGPIGLVTLMAAQAMGASEILITD
LVQQRLDVAKELGATHTLLLKRDQTAEETAVLVQKTMGGQPDKSIDCCGA
ESSARLAIFATRSGGIVVVVGMGAAEIKLPLINALAREVDIRGVFRYCND
YAAALALVASGKVNVKRLVTHHFDIKETAKAFETSRKGLGGAIKVMIHVQ
PRDTNNPRKF*
BS22359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sodh-1-PB | 360 | CG1982-PB | 1..360 | 1..360 | 1853 | 100 | Plus |
| Sodh-1-PA | 360 | CG1982-PA | 1..360 | 1..360 | 1853 | 100 | Plus |
| Sodh-2-PA | 360 | CG4649-PA | 1..360 | 1..360 | 1688 | 90.3 | Plus |
| CG4836-PB | 1214 | CG4836-PB | 892..1205 | 24..343 | 423 | 31.5 | Plus |
| CG4836-PC | 1217 | CG4836-PC | 895..1208 | 24..343 | 423 | 31.5 | Plus |
