BS22360.complete Sequence
1481 bp assembled on 2011-02-02
GenBank Submission: KX800259
> BS22360.complete
GAAGTTATCAGTCGACATGAGTTTTATTTTTAAATTTATTGCCACTTTTG
TACGCAAAATGCTGGAGCTGTTGCAATTTGGAGGGAAAACCCTTACGCAC
ACGCTGAGTATTTATGTAAAAACGAACACGGGCAAAACGCTGACCGTTAA
TCTGGAGCCCCAGTGGGATATTAAAAACGTAAAGGAACTGGTGGCACCAC
AATTGGGACTTCAGCCGGATGATCTAAAGATCATATTTGCCGGTAAGGAA
CTAAGCGATGCCACGACAATAGAGCAATGTGACTTGGGTCAGCAAAGCGT
TTTGCATGCCATTCGTTTGCGACCGCCCGTGCAGCGCCAGAAAATCCAGT
CGGCCACTTTGGAGGAGGAGGAACCTTCGCTTAGCGATGAAGCCTCCAAG
CCTCTAAATGAAACTCTGTTGGACTTGCAGCTGGAAAGCGAGGAGCGTCT
GAATATAACCGATGAAGAAAGAGTCCGTGCCAAAGCGCATTTCTTTGTAC
ATTGCAGCCAATGCGATAAGCTGTGTAATGGCAAACTTCGGGTCCGCTGC
GCTTTATGCAAGGGCGGCGCCTTTACTGTCCATCGTGATCCGGAGTGTTG
GGATGATGTCTTGAAGTCGCGTAGAATTCCCGGTCATTGTGAAAGTCTGG
AGGTGGCCTGCGTGGACAACGCGGCTGGCGATCCGCCCTTCGCTGAATTC
TTCTTCAAGTGTGCTGAGCATGTCTCCGGCGGGGAGAAGGATTTTGCGGC
TCCATTGAATCTAATCAAGAATAACATCAAGAATGTTCCTTGCCTGGCCT
GCACGGATGTGAGTGATACCGTGTTGGTTTTCCCCTGCGCATCGCAGCAC
GTCACCTGTATCGACTGCTTCCGCCATTATTGCCGTTCCCGTTTGGGCGA
GCGTCAGTTTATGCCGCATCCGGACTTCGGCTACACCTTGCCCTGTCCCG
CAGGCTGCGAGCACTCGTTCATCGAGGAGATTCATCACTTCAAGCTGTTG
ACACGCGAGGAGTACGATCGGTACCAGAGATTCGCCACCGAGGAGTATGT
CCTACAGGCAGGTGGAGTACTCTGCCCCCAGCCAGGATGCGGCATGGGCC
TTTTGGTGGAGCCCGATTGTCGCAAGGTGACATGCCAGAACGGCTGTGGA
TACGTGTTCTGCCGCAATTGTCTGCAGGGCTACCATATCGGGGAGTGTCT
GCCCGAGGGGACGGGCGCCAGTGCCACAAACTCCTGCGAGTACACCGTGG
ACCCAAATCGAGCTGCCGAGGCGCGATGGGATGAGGCCAGCAATGTCACC
ATCAAAGTCAGCACCAAGCCCTGTCCAAAATGCAGAACCCCAACGGAGCG
AGATGGCGGTTGCATGCACATGGTCTGCACACGCGCTGGCTGCGGATTCG
AGTGGTGCTGGGTCTGCCAGACTGAGTGGACACGCGACTGCATGGGAGCC
CACTGGTTCGGCTAAAAGCTTTCTAGACCAT
BS22360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| park-RC | 1449 | CG10523-PC | 1..1449 | 17..1465 | 7215 | 99.9 | Plus |
| park-RB | 1449 | CG10523-PB | 1..1449 | 17..1465 | 7215 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| park-RC | 1609 | CG10523-RC | 68..1516 | 17..1465 | 7215 | 99.9 | Plus |
| park-RB | 1630 | CG10523-RB | 89..1537 | 17..1465 | 7215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21195186..21195632 | 1258..812 | 2235 | 100 | Minus |
| 3L | 28110227 | 3L | 21195772..21196119 | 813..466 | 1740 | 100 | Minus |
| 3L | 28110227 | 3L | 21196445..21196702 | 274..17 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 21196193..21196387 | 467..273 | 975 | 100 | Minus |
| 3L | 28110227 | 3L | 21194847..21194957 | 1465..1355 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 21195033..21195130 | 1356..1259 | 460 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:55:57 has no hits.
BS22360.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:16 Download gff for
BS22360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| park-RC | 78..1509 | 32..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:02 Download gff for
BS22360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| park-RB | 104..1535 | 32..1463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:55 Download gff for
BS22360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| park-RB | 104..1535 | 32..1463 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:55 Download gff for
BS22360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21195034..21195130 | 1259..1355 | 97 | <- | Minus |
| 3L | 21194849..21194956 | 1356..1463 | 100 | <- | Minus |
| 3L | 21195186..21195630 | 814..1258 | 100 | <- | Minus |
| 3L | 21195772..21196117 | 468..813 | 100 | <- | Minus |
| 3L | 21196193..21196385 | 275..467 | 100 | <- | Minus |
| 3L | 21196445..21196687 | 32..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:02 Download gff for
BS22360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21188134..21188230 | 1259..1355 | 97 | <- | Minus |
| arm_3L | 21187949..21188056 | 1356..1463 | 100 | <- | Minus |
| arm_3L | 21188286..21188730 | 814..1258 | 100 | <- | Minus |
| arm_3L | 21188872..21189217 | 468..813 | 100 | <- | Minus |
| arm_3L | 21189293..21189485 | 275..467 | 100 | <- | Minus |
| arm_3L | 21189545..21189787 | 32..274 | 100 | | Minus |
BS22360.pep Sequence
Translation from 16 to 1464
> BS22360.pep
MSFIFKFIATFVRKMLELLQFGGKTLTHTLSIYVKTNTGKTLTVNLEPQW
DIKNVKELVAPQLGLQPDDLKIIFAGKELSDATTIEQCDLGQQSVLHAIR
LRPPVQRQKIQSATLEEEEPSLSDEASKPLNETLLDLQLESEERLNITDE
ERVRAKAHFFVHCSQCDKLCNGKLRVRCALCKGGAFTVHRDPECWDDVLK
SRRIPGHCESLEVACVDNAAGDPPFAEFFFKCAEHVSGGEKDFAAPLNLI
KNNIKNVPCLACTDVSDTVLVFPCASQHVTCIDCFRHYCRSRLGERQFMP
HPDFGYTLPCPAGCEHSFIEEIHHFKLLTREEYDRYQRFATEEYVLQAGG
VLCPQPGCGMGLLVEPDCRKVTCQNGCGYVFCRNCLQGYHIGECLPEGTG
ASATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCRTPTERDGGCM
HMVCTRAGCGFEWCWVCQTEWTRDCMGAHWFG*
BS22360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| park-PC | 482 | CG10523-PC | 1..482 | 1..482 | 2666 | 100 | Plus |
| park-PB | 482 | CG10523-PB | 1..482 | 1..482 | 2666 | 100 | Plus |
| CG12362-PA | 511 | CG12362-PA | 140..339 | 259..481 | 214 | 27.3 | Plus |
| CG12362-PB | 511 | CG12362-PB | 140..339 | 259..481 | 214 | 27.3 | Plus |
| ari-1-PF | 503 | CG5659-PF | 105..334 | 229..481 | 204 | 26.4 | Plus |
