BS22362.complete Sequence
2492 bp assembled on 2011-02-17
GenBank Submission: KX803246
> BS22362.complete
GAAGTTATCAGTCGACATGGCGCTGCCCAGAAAACTGATATCCAAGATCT
ACGATATAAAGGCACATGATAGCAGGGTCACGAGCCTTGATCTTGGCGAA
ACTGGACGAGTGCTGGTCACCGGAGGAGAGGATCGCAATGTGAACCTCTG
GGCGATTGGTCAAAATGAGTGCTTTATGTCTCTGACGGGCCACAATCGTT
CCATCGATTGCGTGCGTTTTGCTTATAAGGATAACTTTGTCTACTCCGCC
GACGACATCGGTATAATCCGAAGATGGGATCTGAATTCACAGAAAATCTA
CTCCACGCTAAATGGCCACATGAAGAGTGTTCGCACTCTGGACTTTAACC
CGTCTGGAGAATATGTGGTGTCCGGGAGCAATGATACCACCGTCAGGCTT
TGGGACGTGCAGAACGAAAACAACTGCATTAAGGTATGTCGCGGCCACAT
GTCCCACGTGAATTCCGTAAAATTCTCGCCGGATGGTCTTTGGATTGCCT
CTGCTGGCCTGGAGGGTTCCATACTCATCTGGGACATACGGAAGAGCAAA
CAGATAATGGAGTTCATAGCCGATCCGCCGGTTACGGCTATCACATGCGT
GCAATTCCATCCGTTTGAGTTCCTGCTGGCCGCCGGTCGCGTCGATGGCA
CCGTTTCCATTTACGATCTGGAACACCAGCAGCTCGTCTCGCAGACCACG
CACTTCTATGGCCAGGCCATCAGGTGTATAACCTTTAGTGACAATGGCGA
GTGCCTTTTTGTTGGCAGTTCTTCGGGCATTTCGGTAATTGGATGGGAAC
CGGATCGTGAGCTGGACCATATAAAAAGCACCTGGTCCTCCTTGGCGGAC
ATGAAAGTGGTCAACAATAAGTTGATCTGTGGTTGTCATGAGATCGACAC
CGTTTCAATCAACACCATCAGTCTGGATCGAGTGATACCATTCTATCAGC
CGCCAAACTCACTACCCAACTTTAAGCACAACTCGACGAACCGAAAGAGC
TTTACACGTGGCAACCAGAAGTTCAGGCTGTCAGTTGGCGGTGCCAAGCC
GGCACAGGTGCAGGAGGAGCACGAGGGCGACAAGAGTGGATTGTCCTCGC
CCAACTATAGTCTGGAGGTTGTGAACGAGGCGGTGCTGGAGTCGGCGGAG
ACTTCTCCAATGTCCTCGTTGCCACCTGTCCACTTGGCTTCGATGGCCGG
ATCGTCGGCGGACTTGGCGCCGCATCATGTCGTATATGGCGGAGCAATCG
ATTCTGCCCTAAGGCAGGGTAAGTACTCCAGAGTGCCTGATAATATGGCC
AGCTATGGCAGTAGTTACGGGGCCATCGATACCCGCCTGATGTCCTTGAA
CGAACCCAGTTCACTGCACAAGCCGGACATTTACAATCTATATCCGCTGG
ACAAGAACGAGGAGGCGGATGTGCAGCAGTTGGAGTTCAATCTGAACGAT
AGCAATCCGCCAATACTCAACAACTATGATAACTACGAAATGGCCGAGGA
CTTTCCGGTCAATCAGAACCTGAACTACATTACCAATAACTATAAGCCAG
TGCCCGCAACCTCCACGATCAACGCCTCGTCCAAGTCGATCAAGAAGACC
ACTACCACCACCCTGCACAAGAGGACAACGAACAACATGGCCGGCGCGAA
GCAGACGTCCACGGGCATCTTTGGTGGCAGCAAGCTAAGCCAGGTCTCCT
CGGTCAGCTCCATGGAACTGCACAAGCTGGACGACAACATGGTACTGAAA
AAGTCCTCCTCCTCGAATGTCGTCAACAAGAACAAGCGGCCAATGGGCTC
GGCCCAGAGTCAGTTCAGCAAGGAGAACAATCAACAGAAAAATATCAATG
TGGAGATCATCACAAAGCCACCGATGCGATCCCGCACCACCCTGGATATG
CGTACGTCGCACCAGGCTAAAACTCAGGAAAAGCAAATTCACCAGCAGCA
GCCAATGAACAATCGCATTATAATGGATGATCACGACTTCGATATGCTCT
CGAGATCACACGAGGCTGTGCTGCAGGAGCTGAGCAATCGTCAGTCTAGC
CTGGATTTGCTGCGGCACGCAACAAGGTCTCACGATGTGCTGGGCGCATT
AAGGCAGGCAAGGAGCTGTGGCAAATCCATTTTCATAGATCTACTCGGAG
CCATACTGGAGAAACCGTCCTCGTGGAACTTGGACTTCTGCATGTTTGTG
CTGCCAGAGATTTACGAACTCTTGCAAAGCCAACACAAGTTCCACTTTAC
GAGAGCCTGTGATACCCTGCGTATTATATTGTCGAACTTCTTGCCAACTA
TACAGGAGAACCTCGATTCCTGGGCCGCCAATGGCCTGGGCGTCGATGTG
ACACGCGAGGATCGACAGAGGAAGTGCGCCGAGTGCCAGCGGTGGTTGTT
GCAAATCAAGAACCTGCCCGAGAGCACACACTTTGGGTCCACGCTGTCAC
AATTACAAAACATAATTATTTTCTAAAAGCTTTCTAGACCAT
BS22362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kat80-RA | 2460 | CG13956-PA | 1..2460 | 17..2476 | 12300 | 100 | Plus |
| kat80-RB | 2460 | CG13956-PB | 1..2460 | 17..2476 | 12300 | 100 | Plus |
| kat80-RC | 2457 | CG13956-PC | 1..2457 | 17..2476 | 12220 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kat80-RA | 3285 | CG13956-RA | 352..2811 | 17..2476 | 12300 | 100 | Plus |
| kat80-RB | 3186 | CG13956-RB | 253..2712 | 17..2476 | 12300 | 100 | Plus |
| kat80-RC | 3282 | CG13956-RC | 352..2808 | 17..2476 | 12220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16268274..16269342 | 1942..874 | 5345 | 100 | Minus |
| X | 23542271 | X | 16270239..16270584 | 738..393 | 1730 | 100 | Minus |
| X | 23542271 | X | 16267481..16267715 | 2476..2242 | 1175 | 100 | Minus |
| X | 23542271 | X | 16274283..16274502 | 397..178 | 1100 | 100 | Minus |
| X | 23542271 | X | 16269979..16270116 | 874..737 | 690 | 100 | Minus |
| X | 23542271 | X | 16268070..16268205 | 2078..1943 | 680 | 100 | Minus |
| X | 23542271 | X | 16274564..16274691 | 178..51 | 640 | 100 | Minus |
| X | 23542271 | X | 16267912..16268005 | 2168..2075 | 470 | 100 | Minus |
| X | 23542271 | X | 16267775..16267849 | 2241..2167 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:50:56 has no hits.
BS22362.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 16:37:41 Download gff for
BS22362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat80-RA | 333..2790 | 17..2474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:13 Download gff for
BS22362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat80-RB | 253..2710 | 17..2474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:55 Download gff for
BS22362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat80-RB | 253..2710 | 17..2474 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:55 Download gff for
BS22362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16274284..16274501 | 179..396 | 100 | <- | Minus |
| X | 16274564..16274691 | 51..178 | 100 | <- | Minus |
| X | 16275533..16275566 | 17..50 | 100 | | Minus |
| X | 16267483..16267715 | 2242..2474 | 100 | <- | Minus |
| X | 16267775..16267849 | 2167..2241 | 100 | <- | Minus |
| X | 16267914..16268003 | 2077..2166 | 100 | <- | Minus |
| X | 16268072..16268205 | 1943..2076 | 100 | <- | Minus |
| X | 16268274..16269341 | 875..1942 | 100 | <- | Minus |
| X | 16269979..16270114 | 739..874 | 100 | <- | Minus |
| X | 16270239..16270580 | 397..738 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:13 Download gff for
BS22362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16161516..16161748 | 2242..2474 | 100 | <- | Minus |
| arm_X | 16161808..16161882 | 2167..2241 | 100 | <- | Minus |
| arm_X | 16161947..16162036 | 2077..2166 | 100 | <- | Minus |
| arm_X | 16162105..16162238 | 1943..2076 | 100 | <- | Minus |
| arm_X | 16162307..16163374 | 875..1942 | 100 | <- | Minus |
| arm_X | 16164012..16164147 | 739..874 | 100 | <- | Minus |
| arm_X | 16164272..16164613 | 397..738 | 100 | <- | Minus |
| arm_X | 16168317..16168534 | 179..396 | 100 | <- | Minus |
| arm_X | 16168597..16168724 | 51..178 | 100 | <- | Minus |
| arm_X | 16169566..16169599 | 17..50 | 100 | | Minus |
BS22362.pep Sequence
Translation from 16 to 2475
> BS22362.pep
MALPRKLISKIYDIKAHDSRVTSLDLGETGRVLVTGGEDRNVNLWAIGQN
ECFMSLTGHNRSIDCVRFAYKDNFVYSADDIGIIRRWDLNSQKIYSTLNG
HMKSVRTLDFNPSGEYVVSGSNDTTVRLWDVQNENNCIKVCRGHMSHVNS
VKFSPDGLWIASAGLEGSILIWDIRKSKQIMEFIADPPVTAITCVQFHPF
EFLLAAGRVDGTVSIYDLEHQQLVSQTTHFYGQAIRCITFSDNGECLFVG
SSSGISVIGWEPDRELDHIKSTWSSLADMKVVNNKLICGCHEIDTVSINT
ISLDRVIPFYQPPNSLPNFKHNSTNRKSFTRGNQKFRLSVGGAKPAQVQE
EHEGDKSGLSSPNYSLEVVNEAVLESAETSPMSSLPPVHLASMAGSSADL
APHHVVYGGAIDSALRQGKYSRVPDNMASYGSSYGAIDTRLMSLNEPSSL
HKPDIYNLYPLDKNEEADVQQLEFNLNDSNPPILNNYDNYEMAEDFPVNQ
NLNYITNNYKPVPATSTINASSKSIKKTTTTTLHKRTTNNMAGAKQTSTG
IFGGSKLSQVSSVSSMELHKLDDNMVLKKSSSSNVVNKNKRPMGSAQSQF
SKENNQQKNINVEIITKPPMRSRTTLDMRTSHQAKTQEKQIHQQQPMNNR
IIMDDHDFDMLSRSHEAVLQELSNRQSSLDLLRHATRSHDVLGALRQARS
CGKSIFIDLLGAILEKPSSWNLDFCMFVLPEIYELLQSQHKFHFTRACDT
LRIILSNFLPTIQENLDSWAANGLGVDVTREDRQRKCAECQRWLLQIKNL
PESTHFGSTLSQLQNIIIF*
BS22362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kat80-PA | 819 | CG13956-PA | 1..819 | 1..819 | 4276 | 100 | Plus |
| kat80-PB | 819 | CG13956-PB | 1..819 | 1..819 | 4276 | 100 | Plus |
| kat80-PC | 818 | CG13956-PC | 1..818 | 1..819 | 4259 | 99.9 | Plus |
| wds-PB | 361 | CG17437-PB | 66..313 | 12..260 | 263 | 26.8 | Plus |
| wds-PA | 361 | CG17437-PA | 66..313 | 12..260 | 263 | 26.8 | Plus |
| wds-PB | 361 | CG17437-PB | 110..323 | 14..226 | 235 | 26.6 | Plus |
