BS22363.complete Sequence
2066 bp assembled on 2011-02-17
GenBank Submission: KX804760
> BS22363.complete
GAAGTTATCAGTCGACATGGAAACTGCCAGCAGCGTAAAAGGCAGTACAA
CCTCCCAAATCAGCTCCCTTCAATATAGCAGCGACATTAACGCCGATAGC
CTCGAGCCCGATCAATCTGAGGACTTTCAAACAGTCCTCGGCCTCAAGTA
TTTGCCATCCTGGCCAGCGGTAAATTTGCAGTTTTCGGAACTATGTTATG
TGGTTCCCGACCAGACCAATGCTTCAAAAACAAAGACGATTTTGCGGAGA
GTCAATGGAATGTTTCACTCTCACGAACTTACTGCGATTATAGGGCCTTC
AGGCGCTGGTAAAACCACACTGCTAAACCTGCTGGCGGGCTTTGGCGCCG
TGTGCGAATCCGGCGAGATTTTGGTAAACAACAGTCCGCGAGATATGCGA
GTCTTTCGCAAAATGTCTCGATATATAATGCAGACTGATGTCCTGGACTC
ACAGTTTACCGTACTAGAAATGATGATTTTGGCGGCAAACTTGAAGTTGG
GAAAAGAACTAAATTTAAAACAAAAGCTAGAAGTGATTGACGAAATTTTG
GGAATGTTGCGCCTAAAAGACACCCTAAACACCATGGCTCAAAAGCTATC
TGGGGGTGAGCGAAAGCGTTTATGCATTGCCCTTGAGCTGGTCAACAACC
CACCTGTCATCTTTCTAGATGAACCTACAACTGGTTTAGACGATTTATCG
AGTTCACAATGCATTGCCCTACTCAAAGTTTTGGCCGCCGGGGGGCGCAC
TGTGATCTGCTCCATCCATACGCCATCTGCCAAGATCTTCGAGATGCTCG
ATGCAGTCTACGTTCTAGCCGAAGGCCAGTGCGTCTACCAAGGAAAGGGG
TCCAACATTGTACCTTTCTTGAAGAACTTTGGGCTTTGTTGTCCAATAAC
CTACAACCCGGCTGACTTCATTATCGAAGTTGCTTGCCTTGAGTATGGCG
GGTCCTATCACGAGCCAATGGTAGAAGCCGTGGGCAACGGCAAAGTTGCG
CGATGGAGTCCTCCAGCAGTGGAAGGTGAAACAACAACAACCAAAACCGA
CACCACATCGGGGGCATCGTCGTTTTACGAAAGGGATCAGTTTGACGAAG
AGATTAGCCCAAAACTTTTGGAGGCCAAATGTAGCTGGTGGCTACAGTAC
AAGCTATTGCTTGTGCGTATGCTAATCCAAATGTGGAGAGATAAGTCGTA
CATCAAGCTTAAGTTCTACATGAACATCGTTCTTGCTTTACTGGTGGGTT
CGCTCTACTTTGGTATGGGAACCTCGGCCTCTAAAGCGCTTTTTAACTTC
GGTTTCATGTTCACCATTGTGATAGCATACCTCTACCTTCCTATGATGCC
TGTGCTCTTATATTTTCCCACGGAAATCAATCTGTTAAAAAGGGAGTACA
ACAACCAGTGGTACCGTCTGAGCTCCTACTACGCAGCAATGGTTACCTCA
AAGCTACCATCTATGTTTATTTTGGCCGTTATTTATCTATCCATTGTGTA
CTTAATGTCCAGCCAACCACTTGAATGGTTCCGCTTTGCCATGCTATTTA
CAATAGCTTTCGTAACGGCCCTAACTTCCGACAGTTTTGGCTTGTTGATC
TCCAGTAGACTGAGCTTAGTGAATGCAATGTTCATGGGGCCAGTTCTCGC
CGTGCCGCTGATCCTGCTTTCCATTTACGGCATTGGGTATGGCGGAGGAA
CATACATATCCCCTCTTATGAGGTTTCTCATGCATCTTAGCTACCTTCGC
CATAGTATGGAAGGCCTAGTCGCATCCTTGTACGACTACGGACGCGCCGA
CACAATTTGCGAAGACACGGAAATCTTTTGCTCATTTAAAAAGTCGAAAG
TTTTGTTAGCCTTTTTAGGATTCGAAAACATGCACTATTTGTGGTCTCTA
TCTTGCTTGATGAGTTTTTATTTGCTGTTCACCGTAGCAGCATACTTTAT
GATTAGACTGCGACTGAAACACTCCGAGGTCAGCCCCATTTTTGCATATG
TCATACAGCTGTTAACGAAATATTTTAACTTTACTTCGTACAATTACTAA
AAGCTTTCTAGACCAT
BS22363.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4822-RF | 2034 | CG4822-PF | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| CG4822-RE | 2034 | CG4822-PE | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| CG4822-RB | 2034 | CG4822-PB | 1..2034 | 17..2050 | 10170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4822-RF | 2885 | CG4822-RF | 600..2633 | 17..2050 | 10170 | 100 | Plus |
| CG4822-RE | 2749 | CG4822-RE | 355..2388 | 17..2050 | 10170 | 100 | Plus |
| CG4822-RB | 4008 | CG4822-RB | 1723..3756 | 17..2050 | 10170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 118361..118874 | 1195..682 | 2570 | 100 | Minus |
| 2L | 23513712 | 2L | 117331..117760 | 2050..1621 | 2150 | 100 | Minus |
| 2L | 23513712 | 2L | 117820..118076 | 1621..1365 | 1285 | 100 | Minus |
| 2L | 23513712 | 2L | 119828..120032 | 221..17 | 1025 | 100 | Minus |
| 2L | 23513712 | 2L | 118136..118306 | 1364..1194 | 855 | 100 | Minus |
| 2L | 23513712 | 2L | 118931..119077 | 681..535 | 735 | 100 | Minus |
| 2L | 23513712 | 2L | 119431..119555 | 345..221 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 119134..119237 | 535..432 | 520 | 100 | Minus |
| 2L | 23513712 | 2L | 119288..119376 | 433..345 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:57:56 has no hits.
BS22363.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 16:37:42 Download gff for
BS22363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4822-RA | 168..2199 | 17..2048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:51 Download gff for
BS22363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4822-RB | 1723..3754 | 17..2048 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:14 Download gff for
BS22363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4822-RB | 1723..3754 | 17..2048 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:14 Download gff for
BS22363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 119828..120032 | 17..221 | 100 | | Minus |
| 2L | 117333..117759 | 1622..2048 | 100 | <- | Minus |
| 2L | 117820..118076 | 1365..1621 | 100 | <- | Minus |
| 2L | 118136..118304 | 1196..1364 | 100 | <- | Minus |
| 2L | 118361..118874 | 682..1195 | 100 | <- | Minus |
| 2L | 118931..119076 | 536..681 | 100 | <- | Minus |
| 2L | 119134..119235 | 434..535 | 100 | <- | Minus |
| 2L | 119288..119375 | 346..433 | 100 | <- | Minus |
| 2L | 119431..119554 | 222..345 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:51 Download gff for
BS22363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 117333..117759 | 1622..2048 | 100 | <- | Minus |
| arm_2L | 117820..118076 | 1365..1621 | 100 | <- | Minus |
| arm_2L | 118136..118304 | 1196..1364 | 100 | <- | Minus |
| arm_2L | 118361..118874 | 682..1195 | 100 | <- | Minus |
| arm_2L | 118931..119076 | 536..681 | 100 | <- | Minus |
| arm_2L | 119134..119235 | 434..535 | 100 | <- | Minus |
| arm_2L | 119288..119375 | 346..433 | 100 | <- | Minus |
| arm_2L | 119431..119554 | 222..345 | 100 | <- | Minus |
| arm_2L | 119828..120032 | 17..221 | 100 | | Minus |
BS22363.pep Sequence
Translation from 16 to 2049
> BS22363.pep
METASSVKGSTTSQISSLQYSSDINADSLEPDQSEDFQTVLGLKYLPSWP
AVNLQFSELCYVVPDQTNASKTKTILRRVNGMFHSHELTAIIGPSGAGKT
TLLNLLAGFGAVCESGEILVNNSPRDMRVFRKMSRYIMQTDVLDSQFTVL
EMMILAANLKLGKELNLKQKLEVIDEILGMLRLKDTLNTMAQKLSGGERK
RLCIALELVNNPPVIFLDEPTTGLDDLSSSQCIALLKVLAAGGRTVICSI
HTPSAKIFEMLDAVYVLAEGQCVYQGKGSNIVPFLKNFGLCCPITYNPAD
FIIEVACLEYGGSYHEPMVEAVGNGKVARWSPPAVEGETTTTKTDTTSGA
SSFYERDQFDEEISPKLLEAKCSWWLQYKLLLVRMLIQMWRDKSYIKLKF
YMNIVLALLVGSLYFGMGTSASKALFNFGFMFTIVIAYLYLPMMPVLLYF
PTEINLLKREYNNQWYRLSSYYAAMVTSKLPSMFILAVIYLSIVYLMSSQ
PLEWFRFAMLFTIAFVTALTSDSFGLLISSRLSLVNAMFMGPVLAVPLIL
LSIYGIGYGGGTYISPLMRFLMHLSYLRHSMEGLVASLYDYGRADTICED
TEIFCSFKKSKVLLAFLGFENMHYLWSLSCLMSFYLLFTVAAYFMIRLRL
KHSEVSPIFAYVIQLLTKYFNFTSYNY*
BS22363.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4822-PF | 677 | CG4822-PF | 1..677 | 1..677 | 3477 | 100 | Plus |
| CG4822-PE | 677 | CG4822-PE | 1..677 | 1..677 | 3477 | 100 | Plus |
| CG4822-PB | 677 | CG4822-PB | 1..677 | 1..677 | 3477 | 100 | Plus |
| CG4822-PD | 677 | CG4822-PD | 1..677 | 1..677 | 3477 | 100 | Plus |
| CG4822-PC | 677 | CG4822-PC | 1..677 | 1..677 | 3477 | 100 | Plus |
