BS22374.complete Sequence
1145 bp assembled on 2011-01-27
GenBank Submission: KX800921
> BS22374.complete
GAAGTTATCAGTCGACATGTCGATTACCCTAGAGGAGGAAATCTTCGGCT
TGGCCGTGAATCCGTTCACCAAGTCGCCCGAAATGGTGCGCCGGTACACG
CTTAAGAACTCCAAGGGCATGACCGTGTCAGTGATCCAACTGGGGGCCAT
CATCCAGAGCGTCTGCTTGCCGGACGCCTACAAGAAGGTGGATGATGTGT
GCCTCGGCTTCGACGACATCGCCAGTTACTTGGCCAACAAGGGAGCCTAC
ATCGGTGGGACCCTCGGACGAGTGGCCAACCGGGTGGCCAATGGCGAGTA
TACGTTTAACGACACGAAAGTCTCGGTGACAAAAAATATCCAGGACAAAT
TCCAGCTGCACGGTGGCTTCATTGGATTCGATAGCGTCATATGGGAGGTG
GTACAGAAGTCGGCCGAGGGAGTGATATTTCGGCACGTATCGCCACACGG
ACACGAGGGCTATCCGGGCAAACTGACGTGCCTCATCACCTACCAGCTGG
ACAACGAGAATCGGTTGTGGGTCAGGTACGAGGCCACCACAGATCGCTCC
ACCATGGTCAACCTCTCGAGCCATGCCTACTTCAACTTGGCGGGGCACGG
ATCCGGAGCGAAGGGTCTTTCAGAGCACACGGTGGAGATTGCGTCCGATC
AGATCGTGGACACGGACGAGCTGCAGATTCCCACGGGGAAGCTAGTCGAC
GTCAAGGACACCGTCTTTGATCTCAGGCTGCCGGTTCTGATGCGCGACCG
ACTCATGCAGTTCGAAAATCGTCAGATCAAGGGCTACGACAACTGCTTCG
TGGTCAACGGAGGGCGTGTGCAAAAAAGTGTAGCCAAGGTGGCCAAGATC
GTGCATCCGCCATCCTGCCGGGTACTGGAGGTTTGGACCGACCAGCCCGG
TATGCAGTTCTACACCGCGAACAATCTTACCTCGATAGTGGGCAAAAATT
GCACTAAATATGAGAAGCACGGCTCCTTTTGCGTGGAGACGGAGAAGTTC
CCCGATGCAATGAACCACCCGGAGTTCCCTTCGATCAGCCTCGAGCCGAA
CGAGAAGTATCGGCACGATGTCCTCTACTGGTTTAAGGTCGAGGAGTCCT
GGAAGTGCTGTTGCAACAACGATCCATAAAAGCTTTCTAGACCAT
BS22374.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32444-RA | 1113 | CG32444-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
| CG4988-RA | 1107 | CG4988-PA | 79..1096 | 95..1112 | 1055 | 73.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32444-RA | 1280 | CG32444-RA | 36..1152 | 13..1129 | 5570 | 99.9 | Plus |
| CG4988-RA | 1218 | CG4988-RA | 155..1172 | 95..1112 | 1055 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21638144..21638932 | 341..1129 | 3945 | 100 | Plus |
| 3L | 28110227 | 3L | 21636982..21637313 | 13..344 | 1645 | 99.7 | Plus |
| 2L | 23513712 | 2L | 11695305..11696061 | 356..1112 | 725 | 73.1 | Plus |
| 2L | 23513712 | 2L | 11694958..11695153 | 95..290 | 440 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:59:43 has no hits.
BS22374.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:44 Download gff for
BS22374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32444-RA | 40..1150 | 17..1127 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:15:14 Download gff for
BS22374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32444-RA | 40..1150 | 17..1127 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:40 Download gff for
BS22374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32444-RA | 40..1150 | 17..1127 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:40 Download gff for
BS22374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21636986..21637312 | 17..343 | 100 | -> | Plus |
| 3L | 21638147..21638930 | 344..1127 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:15:14 Download gff for
BS22374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21630086..21630412 | 17..343 | 100 | -> | Plus |
| arm_3L | 21631247..21632030 | 344..1127 | 100 | | Plus |
BS22374.pep Sequence
Translation from 16 to 1128
> BS22374.pep
MSITLEEEIFGLAVNPFTKSPEMVRRYTLKNSKGMTVSVIQLGAIIQSVC
LPDAYKKVDDVCLGFDDIASYLANKGAYIGGTLGRVANRVANGEYTFNDT
KVSVTKNIQDKFQLHGGFIGFDSVIWEVVQKSAEGVIFRHVSPHGHEGYP
GKLTCLITYQLDNENRLWVRYEATTDRSTMVNLSSHAYFNLAGHGSGAKG
LSEHTVEIASDQIVDTDELQIPTGKLVDVKDTVFDLRLPVLMRDRLMQFE
NRQIKGYDNCFVVNGGRVQKSVAKVAKIVHPPSCRVLEVWTDQPGMQFYT
ANNLTSIVGKNCTKYEKHGSFCVETEKFPDAMNHPEFPSISLEPNEKYRH
DVLYWFKVEESWKCCCNNDP*
BS22374.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32444-PA | 370 | CG32444-PA | 1..370 | 1..370 | 1976 | 100 | Plus |
| CG4988-PA | 368 | CG4988-PA | 1..365 | 1..365 | 1367 | 67.7 | Plus |
| CG10996-PA | 392 | CG10996-PA | 2..374 | 3..367 | 908 | 43.4 | Plus |
| CG10467-PA | 364 | CG10467-PA | 2..362 | 3..358 | 886 | 48.1 | Plus |
| CG32445-PA | 367 | CG32445-PA | 6..360 | 7..356 | 852 | 46.8 | Plus |
