Clone BS22379 Report

Search the DGRC for BS22379

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:223
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG12320-RA
Protein status:BS22379.pep: gold
Sequenced Size:1172

Clone Sequence Records

BS22379.complete Sequence

1172 bp assembled on 2011-01-27

GenBank Submission: KX804161

> BS22379.complete
GAAGTTATCAGTCGACATGAACAAGGACAACTCCAGCATGAAAATGGATC
CGCAGCTAGCCCTACGCCTCCTGGCTGATGGCGGAGTGCTGGTCATCGCC
GGTGTACCCGAGGGCACGGAATTCGGCATTGATCTTTGTGCCTACACCAT
TGGTCCGGATTTCCGAGGCGTCAAGATGATTCCACCCGGAGTCCACTACG
TATGGTGCTCCTCCCGTGGTCCCTACGGCGATGCAGCCCCTCGTGTTGGA
TTCGTGCACTTCTTCCATCCGAATGAGATTGTCGTACGAGAGTGGGACCA
CGAACTGGAGGAACTGCGCCCGCGGAGGATTGCCGAACCGGAAGTAGAGC
GAGACCGAATCCGCAAAAACCTAGCCCAACTGGAGCGCGTGCTGGCGCCG
TACGACTATCGTTACGTGGTCCAGTGGAAGGAACTCACCGGCAGCGTGAC
GGAGTCTTGCGTGGATCGCTGCCGTCCGACAGAAGGAACCATCCGTACGA
ACATCGAACTGCAATCCTGCCCGGACGCAGATCGGCCGCGAGGTGGAGCC
GCTACTGTCAGCATAAGCCGCCGGAATGCTGCAGCTCGGATTCTCTTAGA
TGAGAGCGAACTCCTACCGGACCTTAAGCCCGTGGAAGGAACAGCTCCGC
GCTTCACTACCGTACCCCTGCGTGTTCCACAAGATGCCCTGCCCGCTGAT
GTTTCCCGCCATGCCTTGGACTGCATCGATGCTGTTGACAAACTGCTCGA
AGGCTTTGAAACGGCCGATGGACTCATTGAGGAACTGCAGCTGGCTTACG
CATTTTTCCTAGTGGGCTACTCTGTGGAGTCTCTGGCCCACTGGCGCAAG
CTTTTGGGCTTGCTGGCTCACTCGCAAACGGCGGTCACCAAGCACAAGTT
AACGTACATGAAATACAGCGAGGTTTTGGCCCACCAGCTGCCCCATCTGC
CCGAGGAGCTGATGGTGCCTGGTCCGCATAACACCGTCTACAAAGATGTA
CGCGAGCTGCTGGTCAATCTGCATGCGGGCGGCTTAAGTGTCAGCGCTGA
GCGGCTAACTAAGCGGCTGGAGAAAAAATTGGGATGGGAATTCGAGGGCC
TGCTAGACGAGGATCCCGAGGACCAGCCTGTAGTCATCGAACTTCCGGAG
GCCTAGAAGCTTTCTAGACCAT

BS22379.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12320-RB 1140 CG12320-PB 1..1140 17..1156 5625 99.6 Plus
CG12320-RA 1140 CG12320-PA 1..1140 17..1156 5625 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12320-RB 1666 CG12320-RB 36..1175 17..1156 5625 99.6 Plus
CG12320-RA 1237 CG12320-RA 36..1175 17..1156 5625 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18251560..18252699 1156..17 5625 99.6 Minus
Blast to na_te.dros performed on 2014-11-26 21:34:20 has no hits.

BS22379.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:47 Download gff for BS22379.complete
Subject Subject Range Query Range Percent Splice Strand
CG12320-RA 30..1169 17..1156 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:31 Download gff for BS22379.complete
Subject Subject Range Query Range Percent Splice Strand
CG12320-RA 30..1169 17..1156 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:45 Download gff for BS22379.complete
Subject Subject Range Query Range Percent Splice Strand
CG12320-RA 36..1175 17..1156 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:45 Download gff for BS22379.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18251560..18252699 17..1156 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:31 Download gff for BS22379.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14077282..14078421 17..1156 99   Minus

BS22379.pep Sequence

Translation from 16 to 1155

> BS22379.pep
MNKDNSSMKMDPQLALRLLADGGVLVIAGVPEGTEFGIDLCAYTIGPDFR
GVKMIPPGVHYVWCSSRGPYGDAAPRVGFVHFFHPNEIVVREWDHELEEL
RPRRIAEPEVERDRIRKNLAQLERVLAPYDYRYVVQWKELTGSVTESCVD
RCRPTEGTIRTNIELQSCPDADRPRGGAATVSISRRNAAARILLDESELL
PDLKPVEGTAPRFTTVPLRVPQDALPADVSRHALDCIDAVDKLLEGFETA
DGLIEELQLAYAFFLVGYSVESLAHWRKLLGLLAHSQTAVTKHKLTYMKY
SEVLAHQLPHLPEELMVPGPHNTVYKDVRELLVNLHAGGLSVSAERLTKR
LEKKLGWEFEGLLDEDPEDQPVVIELPEA*

BS22379.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12320-PB 379 CG12320-PB 1..379 1..379 1987 100 Plus
CG12320-PA 379 CG12320-PA 1..379 1..379 1987 100 Plus