Clone BS22382 Report

Search the DGRC for BS22382

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:223
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptLSm-4-RB
Protein status:BS22382.pep: full length peptide match
Sequenced Size:650

Clone Sequence Records

BS22382.complete Sequence

650 bp assembled on 2011-01-27

GenBank Submission: KX801128

> BS22382.complete
GAAGTTATCAGTCGACATGTCGTCTACGTTTAGATATAATCTATTAAGGA
GTGTAAAGCCATACACTTCATTCACTCCGCAATTGACTAAGTCTATGTTG
CGTGTCCTTATTCAAGTGTCTGTGCACTACATTGAATCAAAGAAGTCTTC
GTCGGAAGTGCTTTCCCTGGCACTAAATAAACTAACAAATGGAGGTCACG
AAATCCCTCCGAACTTTTGTGAACTTTTTACAATGGTTTTCTTGACAATG
CAAATCTTTTTAAGATATCCCAAGGGCGTGGTGAAGCATCATGAGCTGCG
AAAATGTTTAATGGACGATTTAAATTTAACAGAAGAATATGTTGAAGATA
TCTGCAAAGTTTTGCTTAACCATCGAGACGTACTGAGCAAGAACTTTTCA
GATACTAAAATGGACCGTGTCAAAATGTCAAAGTTGCAATGGAGAATCAA
CATTTCCTTATCATTAAATACCGTGCAAATTGATAAACCTACAATAGTCC
TCCACTTTAAGCTCCAAAATAAGGAATATCGAACTTTAGAATTGCCACTG
TCCATGTTTCAACAAGTGCGCTATAATATTGCTCTTTTACTAAATGAATT
GCAGTCATTGCAAAGCCGGTTGGCTTTAAAATAAAAGCTTTCTAGACCAT

BS22382.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
LSm-4-RC 618 CG33677-PC 1..618 17..634 3060 99.7 Plus
LSm-4-RB 618 CG33677-PB 1..618 17..634 3060 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
LSm-4-RC 931 CG33677-RC 68..685 17..634 3060 99.7 Plus
LSm-4-RB 1578 CG33677-RB 68..685 17..634 3060 99.7 Plus
CG17768-RA 1578 CG17768-RA 68..685 17..634 3060 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10404829..10405136 324..17 1540 100 Minus
2L 23513712 2L 10404385..10404550 634..469 800 98.8 Minus
2L 23513712 2L 10404611..10404754 468..325 720 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:48:27 has no hits.

BS22382.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:04 Download gff for BS22382.complete
Subject Subject Range Query Range Percent Splice Strand
CG17768-RA 40..655 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:01 Download gff for BS22382.complete
Subject Subject Range Query Range Percent Splice Strand
CG17768-RA 68..683 17..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:08 Download gff for BS22382.complete
Subject Subject Range Query Range Percent Splice Strand
CG17768-RA 68..683 17..632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:08 Download gff for BS22382.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10404387..10404550 469..632 98 <- Minus
2L 10404611..10404754 325..468 100 <- Minus
2L 10404829..10405136 17..324 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:01 Download gff for BS22382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10404387..10404550 469..632 98 <- Minus
arm_2L 10404611..10404754 325..468 100 <- Minus
arm_2L 10404829..10405136 17..324 100   Minus

BS22382.pep Sequence

Translation from 16 to 633

> BS22382.pep
MSSTFRYNLLRSVKPYTSFTPQLTKSMLRVLIQVSVHYIESKKSSSEVLS
LALNKLTNGGHEIPPNFCELFTMVFLTMQIFLRYPKGVVKHHELRKCLMD
DLNLTEEYVEDICKVLLNHRDVLSKNFSDTKMDRVKMSKLQWRINISLSL
NTVQIDKPTIVLHFKLQNKEYRTLELPLSMFQQVRYNIALLLNELQSLQS
RLALK*

BS22382.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
LSm-4-PC 205 CG33677-PC 1..205 1..205 1039 100 Plus
LSm-4-PB 205 CG33677-PB 1..205 1..205 1039 100 Plus